March 2012 Archives by date

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Starting: Thu Mar 1 03:30:47 EST 2012
Ending: Fri Mar 30 11:12:20 EDT 2012
Messages: 190

• [galaxy-user] Error in DepthOfCoverage (GATK) tool   Praveen Raj Somarajan
• [galaxy-user] Quality trimming of sequences before RNA-Seq   Noa Sher
• [galaxy-user] Quality trimming of sequences before RNA-Seq   Bomba Dam
• [galaxy-user] Filtering reads on wrong strand before FPKM scoring on cufflinks   Noa Sher
• [galaxy-user] Filtering reads on wrong strand before FPKM scoring on cufflinks   Bomba Dam
• [galaxy-user] Getting errors trying to enable samtools_mpileup   Waldron, Michael H
• [galaxy-user] Getting errors trying to enable samtools_mpileup   Jennifer Jackson
• [galaxy-user] Metagenomics   Scott Tighe
• [galaxy-user] [galaxy-bugs] GI errors in the megablast table of results ?   Peter Cock
• [galaxy-user] Error in DepthOfCoverage (GATK) tool   Daniel Blankenberg
• [galaxy-user] error uploading from ftp site   Keith E. Giles
• [galaxy-user] PE reads d ont map after trimming   Buxton Chris (NORTH BRISTOL NHS TRUST)
• [galaxy-user] Speed up uploading into local Galaxy, terribly slow!!   Alejandra Rougon
• [galaxy-user] Speed up uploading into local Galaxy, terribly slow!!   Greg Von Kuster
• [galaxy-user] Speed up uploading into local Galaxy, terribly slow!!   Alejandra Rougon
• [galaxy-user] Speed up uploading into local Galaxy, terribly slow!!   Greg Von Kuster
• [galaxy-user] Error using intersect tool: "problem: 536870912 is larger than the size of this BitSet (536870912)."   Tim Reddy
• [galaxy-user] Error in DepthOfCoverage (GATK) tool   Praveen Raj Somarajan
• [galaxy-user] Error in DepthOfCoverage (GATK) tool   Daniel Blankenberg
• [galaxy-user] Cufflink not working   Ateequr Rehman
• [galaxy-user] error uploading from ftp site   Dannon Baker
• [galaxy-user] Production environment and Apache's sendfile   Yuri D'Elia
• [galaxy-user] How to add alignment to the MAF   chengyuyan
• [galaxy-user] fastq-MCF   Benoît REMENANT
• [galaxy-user] Error on custom builds on public galaxy server   David Beck
• [galaxy-user] BAM to SAM   Matthew McCormack
• [galaxy-user] Galaxy unable to set metadata for GFF files   Hemarajata, Peera
• [galaxy-user] Galaxy unable to set metadata for GFF files   Peter Cock
• [galaxy-user] Progress indicators/feedback for long jobs on Galaxy   Greg Edwards
• [galaxy-user] Progress indicators/feedback for long jobs on Galaxy   Jennifer Jackson
• [galaxy-user] Variable number of inputs in Workflow (or optional inputs)   Daniel Sobral
• [galaxy-user] Variable number of inputs in Workflow (or optional inputs)   Jennifer Jackson
• [galaxy-user] Production environment and Apache's sendfile   Jennifer Jackson
• [galaxy-user] Galaxy unable to set metadata for GFF files   Jennifer Jackson
• [galaxy-user] April GMOD meeting early registration   Scott Cain
• [galaxy-user] BAM to SAM   Jennifer Jackson
• [galaxy-user] PE reads d ont map after trimming   Jennifer Jackson
• [galaxy-user] Variable number of inputs in Workflow (or optional inputs)   Daniel Sobral
• [galaxy-user] Variable number of inputs in Workflow (or optional inputs)   Jennifer Jackson
• [galaxy-user] Advice on disabling SGE queue on galaxy-cloudman   John Major
• [galaxy-user] FastQC in main galaxy server?   Daniel Sobral
• [galaxy-user] Tophat "Mean Inner Distance between Mate Pairs"   杨继文
• [galaxy-user] Tophat "Mean Inner Distance between Mate Pairs"   Carlos Borroto
• [galaxy-user] Problem using Galaxy on the cloud   Jan R McDowell
• [galaxy-user] Advice on disabling SGE queue on galaxy-cloudman   Jennifer Jackson
• [galaxy-user] Problem using Galaxy on the cloud   Jennifer Jackson
• [galaxy-user] 'compare two datasets script'?   kenlee nakasugi
• [galaxy-user] Cufflink not working   Jennifer Jackson
• [galaxy-user] Advice on disabling SGE queue on galaxy-cloudman   Enis Afgan
• [galaxy-user] 'compare two datasets script'?   Jennifer Jackson
• [galaxy-user] Question about plotting circos plot   shamsher jagat
• [galaxy-user] bed to gff   Robin Mjelle
• [galaxy-user] Tophat   杨继文
• [galaxy-user] Job running speed is really slow   杨继文
• [galaxy-user] Fwd: visualisation of a bam file   DeQuincy Prescott (UCL)
• [galaxy-user] Fwd: visualisation of a bam file   Jennifer Jackson
• [galaxy-user] Dataset name in dataset file   Cittaro Davide
• [galaxy-user] question from new Galaxy user   Elwood Linney
• [galaxy-user] question from a new Galaxy user   Elwood Linney, Ph.D.
• [galaxy-user] Fwd: visualisation of a bam file   Jennifer Jackson
• [galaxy-user] Fwd: Question about plotting circos plot   shamsher jagat
• [galaxy-user] Question about plotting circos plot   Björn Grüning
• [galaxy-user] question from a new Galaxy user   Jennifer Jackson
• [galaxy-user] description of "Find diagnostic hits"   Jennifer Jackson
• [galaxy-user] description of "Find diagnostic hits"   William Hsiao
• [galaxy-user] Metagenomics   Jennifer Jackson
• [galaxy-user] FastQC in main galaxy server?   Jennifer Jackson
• [galaxy-user] Problem Interset interval tools   Mónica Pérez Alegre
• [galaxy-user] Speed up uploading into local Galaxy, terribly slow!!   Alejandra Rougon
• [galaxy-user] Problems starting Galaxy Cloudman   Greg Edwards
• [galaxy-user] Problems starting Galaxy Cloudman   Dannon Baker
• [galaxy-user] Question about aaChange tool.   Maha Al Kahtani
• [galaxy-user] question from a new Galaxy user   Kevin L
• [galaxy-user] Clustal error during Bowtie run (public server)   Hemarajata, Peera
• [galaxy-user] Problems starting Galaxy Cloudman   Greg Edwards
• [galaxy-user] Problems starting Galaxy Cloudman   Ross
• [galaxy-user] Clustal error during Bowtie run (public server)   Jennifer Jackson
• [galaxy-user] Problems starting Galaxy Cloudman   Enis Afgan
• [galaxy-user] Question about aaChange tool.   Jennifer Jackson
• [galaxy-user] Job running speed is really slow   Jennifer Jackson
• [galaxy-user] Tophat   Jennifer Jackson
• [galaxy-user] Incorrect permissions when uploading files   James Vincent
• [galaxy-user] Incorrect permissions when uploading files   Greg Von Kuster
• [galaxy-user] Problems starting Galaxy Cloudman   Greg Edwards
• [galaxy-user] [galaxy-dev] Welcome.html page   Greg Edwards
• [galaxy-user] [galaxy-dev] Welcome.html page   Ross
• [galaxy-user] [galaxy-dev] Welcome.html page   Huayan Gao
• [galaxy-user] Extracting number of reads from Bowtie analysis   Jerzy Dyczkowski
• [galaxy-user] Metagenomics   John Major
• [galaxy-user] Metagenomics   Peter Cock
• [galaxy-user] Metagenomics   Scott Tighe
• [galaxy-user] Advice on disabling SGE queue on galaxy-cloudman   Enis Afgan
• [galaxy-user] March 12, 2012 Galaxy Development News Brief   Jennifer Jackson
• [galaxy-user] March 12, 2012 Galaxy Development News Brief   Jennifer Jackson
• [galaxy-user] March 12, 2012 Galaxy Development News Brief   Jennifer Jackson
• [galaxy-user] Metagenomics   Jennifer Jackson
• [galaxy-user] How to Pass Parameter   La Chi
• [galaxy-user] How to Pass Parameter   Jennifer Jackson
• [galaxy-user] Tophat "Mean Inner Distance between Mate Pairs"   Jennifer Jackson
• [galaxy-user] bed to gff   Jennifer Jackson
• [galaxy-user] Metagenomics   Montoya, Vincent
• [galaxy-user] Metagenomics   Jennifer Jackson
• [galaxy-user] Quick question on generated tables   Carly Hom
• [galaxy-user] Extracting number of reads from Bowtie analysis   Jennifer Jackson
• [galaxy-user] Problem Interset interval tools   Jennifer Jackson
• [galaxy-user] Dataset name in dataset file   Jennifer Jackson
• [galaxy-user] Error using intersect tool: "problem: 536870912 is larger than the size of this BitSet (536870912)."   Jennifer Jackson
• [galaxy-user] Quick question on generated tables   Ross
• [galaxy-user] Question about plotting circos plot   Jennifer Jackson
• [galaxy-user] Tophat error   David Matthews
• [galaxy-user] Maq consensus calling changes quality score of the read?   Antony Jose
• [galaxy-user] Tophat error   David Matthews
• [galaxy-user] Create VCF file from samtools pile-up   Geert Vandeweyer
• [galaxy-user] Tophat error   David Matthews
• [galaxy-user] Tophat error   Jennifer Jackson
• [galaxy-user] wig file conversion   Horvath, Lindsay
• [galaxy-user] Tophat error   David Matthews
• [galaxy-user] Maq consensus calling changes quality score of the read?   Antony Jose
• [galaxy-user] Question about aaChange tool.   Jennifer Jackson
• [galaxy-user] Read Length Distribution   Elad Firnberg
• [galaxy-user] Read Length Distribution   Jennifer Jackson
• [galaxy-user] Read Length Distribution   Jennifer Jackson
• [galaxy-user] fastq-MCF   Jennifer Jackson
• [galaxy-user] wig file conversion   Jennifer Jackson
• [galaxy-user] Dear Galaxy Developer, where is the "history/workflow" flow stored in the local machine?   yangchen at sibs.ac.cn
• [galaxy-user] Dear Galaxy Developer, where is the "history/workflow" file stored in the local machine?   杨晨
• [galaxy-user] Dear Galaxy Developer, where is the "history/workflow" file stored in the local machine?   杨晨
• [galaxy-user] Combining two workflows into one   Innocent Onsongo
• [galaxy-user] Combining two workflows into one   Peter Cock
• [galaxy-user] Combining two workflows into one   Peter Cock
• [galaxy-user] Combining two workflows into one   Innocent Onsongo
• [galaxy-user] Cuffdiff result P and q values   Ateequr Rehman
• [galaxy-user] Bowtie Seed length (-l) and non-unique reads mode (m=-1)   Eric Guo
• [galaxy-user] Table with gene count reads   Luciano Cosme
• [galaxy-user] ftp   Richard Mark White
• [galaxy-user] ftp   Nate Coraor
• [galaxy-user] [galaxy-dev] Tophat error   Jennifer Jackson
• [galaxy-user] GCC2012 Early Registration is Now Open   Dave Clements
• [galaxy-user] Cuffdiff result P and q values   Jennifer Jackson
• [galaxy-user] [galaxy-dev] Tophat error   David Matthews
• [galaxy-user] Trouble with BLAST+ and .loc file   Makis Ladoukakis
• [galaxy-user] Trouble with BLAST+ and .loc file   Peter Cock
• [galaxy-user] Trouble with BLAST+ and .loc file   Björn Grüning
• [galaxy-user] Trouble with BLAST+ and .loc file   Peter Cock
• [galaxy-user] Trouble with BLAST+ and .loc file   Makis Ladoukakis
• [galaxy-user] Bowtie Seed length (-l) and non-unique reads mode (m=-1)   Jennifer Jackson
• [galaxy-user] How to add alignment to the MAF   Jennifer Jackson
• [galaxy-user] Deploying a tool   Mark Maienschein-Cline
• [galaxy-user] Deploying a tool   Greg Von Kuster
• [galaxy-user] "Job is waiting to run"   Shisheng Li
• [galaxy-user] (no subject)   Moein Farshchian
• [galaxy-user] Drosophila yakuba reference genome   Evgeny Brud
• [galaxy-user] Chip-seq exercise   Joshua Udall
• [galaxy-user] Bowtie Seed length (-l) and non-unique reads mode (m=-1)   Jennifer Jackson
• [galaxy-user] Drosophila yakuba reference genome   Jennifer Jackson
• [galaxy-user] "Job is waiting to run"   Mónica Pérez Alegre
• [galaxy-user] Chip-seq exercise   Daniel Blankenberg
• [galaxy-user] "Job is waiting to run"   Nate Coraor
• [galaxy-user] Subdivide peaks   Mónica Pérez Alegre
• [galaxy-user] problems with color settings in Visualizations   Mackenzie Gavery
• [galaxy-user] problems with color settings in Visualizations   Jeremy Goecks
• [galaxy-user] Table with gene count reads   Jennifer Jackson
• [galaxy-user] Reference genomes at local instance of Galaxy   Yang, Yanming
• [galaxy-user] Reference genomes at local instance of Galaxy   Jennifer Jackson
• [galaxy-user] Blast2GO local instance Re: Table with gene count reads   Luciano Cosme
• [galaxy-user] Blast2GO local instance Re: Table with gene count reads   Peter Cock
• [galaxy-user] Chip-seq exercise   Casey Bergman
• [galaxy-user] Cleanup script error - guess_dialect_for_url   rocco.piazza
• [galaxy-user] How can I sort BAM/SAM file by read names?   Carlos Borroto
• [galaxy-user] How can I sort BAM/SAM file by read names?   Jennifer Jackson
• [galaxy-user] Cleanup script error - guess_dialect_for_url   Jennifer Jackson
• [galaxy-user] RV: Subdivide peaks   Mónica Pérez Alegre
• [galaxy-user] Cow Genome update in Tophat   Aranday-Cortes, Elihu
• [galaxy-user] Cow Genome update in Tophat   Jennifer Jackson
• [galaxy-user] Cow Genome update in Tophat   Church, Deanna (NIH/NLM/NCBI) [E]
• [galaxy-user] Cow Genome update in Tophat   Jennifer Jackson
• [galaxy-user] https://biocloudcentral.herokuapp.com/launch site is down   mailing list
• [galaxy-user] https://biocloudcentral.herokuapp.com/launch site is down   Jennifer Jackson
• [galaxy-user] https://biocloudcentral.herokuapp.com/launch site is down   Brad Chapman
• [galaxy-user] https://biocloudcentral.herokuapp.com/launch site is down   mailing list
• [galaxy-user] Training on NGS data analysis   Aarti Desai
• [galaxy-user] how to view the Tophat output ?   Xu, Jianpeng
• [galaxy-user] how to view the tophat output ?   Xu, Jianpeng
• [galaxy-user] correct input into the minimum alignment count   vang0280 at umn.edu
• [galaxy-user] how to view the Tophat output ?   Jennifer Jackson
• [galaxy-user] how to view the Tophat output ?   James Robinson
• [galaxy-user] correct input into the minimum alignment count   Jennifer Jackson
• [galaxy-user] CummeRband in Galaxy platform   Bomba Dam
• [galaxy-user] CummeRband in Galaxy platform   Carlos Borroto
• [galaxy-user] CummeRband in Galaxy platform   Noa Sher

Last message date: Fri Mar 30 11:12:20 EDT 2012
Archived on: Fri Mar 30 11:12:34 EDT 2012

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