[galaxy-user] Speed up uploading into local Galaxy, terribly slow!!

[Greg Von Kuster]

Do you restart your Galaxy server when you make changes to universe_wsgi.ini (like adding / uncommenting email addresses for the admin_users setting)?


On Mar 1, 2012, at 12:56 PM, Alejandra Rougon wrote:

> Thanks Jennifer, I already uncomment and add my email address but still the admin link does not appear. I then registered my email in users and logged in with that email address and I still don't see the link.
> when I type /admin at  the of the url it says that I have to be logged in as an administrator. 
> sorry I am a newbe on this admin stuff.
>  
> From: Jennifer Jackson <jen at bx.psu.edu>
> To: Alejandra Rougon <alerougon at yahoo.com> 
> Cc: "galaxy-user at lists.bx.psu.edu" <galaxy-user at lists.bx.psu.edu>; "closeticket at galaxyproject.org" <closeticket at galaxyproject.org> 
> Sent: Tuesday, 28 February 2012, 17:19
> Subject: Re: [galaxy-user] Speed up uploading into local Galaxy, terribly slow!!
> 
> Hi,
> 
> You will want to assign yourself as an administrator in the 
> universe_wsgi.ini file.
> 
> # Administrative users - set this to a comma-separated list of valid Galaxy
> # users (email addresses).  These users will have access to the Admin 
> section
> # of the server, and will have access to create users, groups, roles,
> # libraries, and more.  For more information, see:
> # http://wiki.g2.bx.psu.edu/Admin/Interface
> #admin_users = None
> ^^ uncomment and add your login email here
> 
> Other wikis that may be helpful, especially if user login is not yet set up:
> http://wiki.g2.bx.psu.edu/Admin/Config/Performance/Production%20Server
> http://wiki.g2.bx.psu.edu/Admin/Config
> 
> Hopefully this helps,
> 
> Jen
> Galaxy team
> 
> On 2/28/12 2:59 PM, Alejandra Rougon wrote:
> >
> > Thank you Greg, I saw the wiki but I do not see the admin link in my
> > galaxy interface. How do you open galaxy as an administrator?
> > t
> > ------------------------------------------------------------------------
> > *From:* Greg Von Kuster <greg at bx.psu.edu>
> > *To:* Alejandra Rougon <alerougon at yahoo.com>
> > *Cc:* "galaxy-user at lists.bx.psu.edu" <galaxy-user at lists.bx.psu.edu>
> > *Sent:* Tuesday, 28 February 2012, 14:02
> > *Subject:* Re: [galaxy-user] Speed up uploading into local Galaxy,
> > terribly slow!!
> >
> > You can upload your large file to Galaxy data libraries using a
> > combination of "Upload files from filesystem paths" and "Do not copy
> > data into Galaxy's default file store".
> >
> > See this wiki:
> >
> > http://wiki.g2.bx.psu.edu/Admin/Data%20Libraries/Uploading%20Library%20Files
> >
> > For all of the information on Galaxy data libraries, see this wiki:
> >
> > http://wiki.g2.bx.psu.edu/Admin/Data%20Libraries/Libraries
> >
> > Greg Von Kuster
> >
> >
> > On Feb 28, 2012, at 2:54 PM, Alejandra Rougon wrote:
> >
> >> Hello, I tried to search in the forums and although this question has
> >> appeared many times I still don't have a solution.
> >>
> >> I cannot manage to upload big files into the local galaxy, it just
> >> takes ages. Can I not just copy and paste into a local directory? why
> >> do I have to upload the files if it is already installed locally?
> >> I do not have a server webpage in order to use the url address option
> >> If I do it through ftp (locally) what ftp address shall I put? ftp
> >> localhost:8080??
> >>
> >> Is there any other option to speed up uploading, is so slow that is no
> >> longer worth using it, please help me!
> >>
> >> ___________________________________________________________
> >> The Galaxy User list should be used for the discussion of
> >> Galaxy analysis and other features on the public server
> >> at usegalaxy.org <http://usegalaxy.org>. Please keep all replies on
> >> the list by
> >> using "reply all" in your mail client. For discussion of
> >> local Galaxy instances and the Galaxy source code, please
> >> use the Galaxy Development list:
> >>
> >> http://lists.bx.psu.edu/listinfo/galaxy-dev
> >>
> >> To manage your subscriptions to this and other Galaxy lists,
> >> please use the interface at:
> >>
> >> http://lists.bx.psu.edu/
> >
> >
> >
> >
> >
> > ___________________________________________________________
> > The Galaxy User list should be used for the discussion of
> > Galaxy analysis and other features on the public server
> > at usegalaxy.org.  Please keep all replies on the list by
> > using "reply all" in your mail client.  For discussion of
> > local Galaxy instances and the Galaxy source code, please
> > use the Galaxy Development list:
> >
> >    http://lists.bx.psu.edu/listinfo/galaxy-dev
> >
> > To manage your subscriptions to this and other Galaxy lists,
> > please use the interface at:
> >
> >    http://lists.bx.psu.edu/
> 
> -- 
> Jennifer Jackson
> http://usegalaxy.org
> http://galaxyproject.org/wiki/Support
> 
> 
> ___________________________________________________________
> The Galaxy User list should be used for the discussion of
> Galaxy analysis and other features on the public server
> at usegalaxy.org.  Please keep all replies on the list by
> using "reply all" in your mail client.  For discussion of
> local Galaxy instances and the Galaxy source code, please
> use the Galaxy Development list:
> 
>  http://lists.bx.psu.edu/listinfo/galaxy-dev
> 
> To manage your subscriptions to this and other Galaxy lists,
> please use the interface at:
> 
>  http://lists.bx.psu.edu/

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