October 2011 Archives by author

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Starting: Sat Oct 1 08:57:55 EDT 2011
Ending: Mon Oct 31 19:12:36 EDT 2011
Messages: 264

• [galaxy-user] Possible to browse local filesystem   graham etherington (TSL)
• [galaxy-user] version tophat and cufflinks   graham etherington (TSL)
• [galaxy-user] Cost   Enis Afgan
• [galaxy-user] Problem launching cloud instance   Enis Afgan
• [galaxy-user] Cistrome   Albena Pramatarova, Dr
• [galaxy-user] Does Cuffdiff support multiple groups analysis   An, Hongyan
• [galaxy-user] Does Cuffdiff support multiple groups analysis   An, Hongyan
• [galaxy-user] Problem with new tool shed   Florent Angly
• [galaxy-user] Problem with new tool shed   Florent Angly
• [galaxy-user] Patch for better FASTQ description handling   Florent Angly
• [galaxy-user] Problem with new tool shed   Florent Angly
• [galaxy-user] Problem with new tool shed   Florent Angly
• [galaxy-user] Problem with new tool shed   Florent Angly
• [galaxy-user] Patch for better FASTQ description handling   Florent Angly
• [galaxy-user] Patch for better FASTQ description handling   Florent Angly
• [galaxy-user] FASTQ Quality Trimmer for PE Illumina?   Florent Angly
• [galaxy-user] tool config file: multi-select for files?   Appelt, Uwe
• [galaxy-user] tool.xml "&>" console redirection within command-tag   Appelt, Uwe
• [galaxy-user] tool.xml "&>" console redirection within command-tag   Appelt, Uwe
• [galaxy-user] tool.xml "&>" console redirection within command-tag   Appelt, Uwe
• [galaxy-user] tool.xml "&>" console redirection within command-tag   Appelt, Uwe
• [galaxy-user] Adding new tools in Galaxy   Dannon Baker
• [galaxy-user] Adding new tools in Galaxy   Dannon Baker
• [galaxy-user] Subscribing to Job Status Events   Dannon Baker
• [galaxy-user] Zoom function on workflow editor?   Dannon Baker
• [galaxy-user] Issue about uploading data   Dannon Baker
• [galaxy-user] Map with Bowtie for Illumina (version 1.1.2)   Dannon Baker
• [galaxy-user] Amazon AMI   Dannon Baker
• [galaxy-user] Q about 'Compute' tool   Russell Bell
• [galaxy-user] save/export image from workflow editor?   Casey Bergman
• [galaxy-user] Q about 'Compute' tool   Daniel Blankenberg
• [galaxy-user] Memory issues while using Galaxy   Daniel Blankenberg
• [galaxy-user] Regarding perl script   Daniel Blankenberg
• [galaxy-user] Patch for better FASTQ description handling   Daniel Blankenberg
• [galaxy-user] bed12 format for stitching blocks given a set of coding exon intervals   Daniel Blankenberg
• [galaxy-user] tool config file: multi-select for files?   Daniel Blankenberg
• [galaxy-user] data format   Klaudyna Borewicz
• [galaxy-user] get data through FTP site   LOURO Bruno
• [galaxy-user] Patch for better FASTQ description handling   Eric Cabot
• [galaxy-user] customizing mm9 mouse reference genome and then using that as the ref genome when uploading Illumina data   Christopher Callaway
• [galaxy-user] Problem launching cloud instance   Brad Chapman
• [galaxy-user] Names for genes in RNA-Seq analysis (Emilie Chautard)   Emilie Chautard
• [galaxy-user] Upcoming Galaxy Events   Dave Clements
• [galaxy-user] Problem in randomly selecting sequences?   Peter Cock
• [galaxy-user] Problem in randomly selecting sequences?   Peter Cock
• [galaxy-user] fastq groomer   Peter Cock
• [galaxy-user] fastq groomer   Peter Cock
• [galaxy-user] Patch for better FASTQ description handling   Peter Cock
• [galaxy-user] Patch for better FASTQ description handling   Peter Cock
• [galaxy-user] Patch for better FASTQ description handling   Peter Cock
• [galaxy-user] tool.xml "&>" console redirection within command-tag   Peter Cock
• [galaxy-user] tool.xml "&>" console redirection within command-tag   Peter Cock
• [galaxy-user] tool.xml "&>" console redirection within command-tag   Peter Cock
• [galaxy-user] Problem with bam and/or bai files   Peter Cock
• [galaxy-user] reducing size on disk to comply with quotas   Nate Coraor
• [galaxy-user] Over disk quota   Nate Coraor
• [galaxy-user] permanently delete problem   Nate Coraor
• [galaxy-user] permanently delete problem   Nate Coraor
• [galaxy-user] Local instance data upload   Luciano Cosme
• [galaxy-user] Data files for Gencode Partition tool   Harald Dahle
• [galaxy-user] Issue about uploading data   Nandan Deshpande
• [galaxy-user] Q about 'Compute' tool   Ian Donaldson
• [galaxy-user] Q about 'Compute' tool   Ian Donaldson
• [galaxy-user] Q about 'Compute' tool   Ian Donaldson
• [galaxy-user] Problem with bam and/or bai files   Mike Dufault
• [galaxy-user] Problem with bam and/or bai files   Mike Dufault
• [galaxy-user] Problem with Cuffcompare   Chandu Galaxy
• [galaxy-user] Problem with Cuffcompare   Chandu Galaxy
• [galaxy-user] Problem with Cuffcompare   Chandu Galaxy
• [galaxy-user] Does Cuffdiff support multiple groups analysis   Jeremy Goecks
• [galaxy-user] run tophat in galaxy   Jeremy Goecks
• [galaxy-user] Problem with Cuffcompare   Jeremy Goecks
• [galaxy-user] cufflinks error   Jeremy Goecks
• [galaxy-user] Problem with Cuffcompare   Jeremy Goecks
• [galaxy-user] Problem with Cuffcompare   Jeremy Goecks
• [galaxy-user] Permissions and private roles   Jeremy Goecks
• [galaxy-user] SamTools processing issue   Golbus, Jessica
• [galaxy-user] Zoom function on workflow editor?   Arthur Goldberg
• [galaxy-user] reducing size on disk to comply with quotas   Patrick Kenneth Gonzales
• [galaxy-user] Names for genes in RNA-Seq analysis   Michael Gooch
• [galaxy-user] New Genome Load Request   Mark Guiltinan
• [galaxy-user] Cost   Roman Valls Guimera
• [galaxy-user] My tophat jobs are stuck in the queue   Roman Valls Guimera
• [galaxy-user] get data through FTP site   Benoit HENNUY
• [galaxy-user] RNAseq Clostridium butyricum   Benoit HENNUY
• [galaxy-user] passing the url for ucsc browser (send output to galaxy)   Joseph Hargitai
• [galaxy-user] aligning long reads   Bob Harris
• [galaxy-user] Creating or Downloading GTF files for use with Cuffcompare   Joe Harrison
• [galaxy-user] RNA-seq with Staphylococcus aureus strain Newman   Joe J Harrison
• [galaxy-user] Q about 'Compute' tool   Hans-Rudolf Hotz
• [galaxy-user] Splitting a file   Hans-Rudolf Hotz
• [galaxy-user] how to transfer gene id into protein id   Hans-Rudolf Hotz
• [galaxy-user] Genome database/builds missing?   Daniel N. Hupalo
• [galaxy-user] Cost   Lizex Husselmann
• [galaxy-user] bed12 format for stitching blocks given a set of coding exon intervals   Amit Indap
• [galaxy-user] TopHat--BAM merge   Jennifer Jackson
• [galaxy-user] SamTools processing issue   Jennifer Jackson
• [galaxy-user] Does Cuffdiff support multiple groups analysis   Jennifer Jackson
• [galaxy-user] Pilup file and counting reads in 200bp windows   Jennifer Jackson
• [galaxy-user] Deletions   Jennifer Jackson
• [galaxy-user] aligning long reads   Jennifer Jackson
• [galaxy-user] Deletions   Jennifer Jackson
• [galaxy-user] extracting 18S rRNA sequence   Jennifer Jackson
• [galaxy-user] BED to BAM conversion in Galaxy   Jennifer Jackson
• [galaxy-user] Macs   Jennifer Jackson
• [galaxy-user] 1000 genome variant calls   Jennifer Jackson
• [galaxy-user] data libraries   Jennifer Jackson
• [galaxy-user] file deletion   Jennifer Jackson
• [galaxy-user] How to count reads in 200bp windows and save the output per chromosome?   Jennifer Jackson
• [galaxy-user] How to count reads in 200bp windows and save the output per chromosome?   Jennifer Jackson
• [galaxy-user] QUESTION   Jennifer Jackson
• [galaxy-user] Q about 'Compute' tool   Jennifer Jackson
• [galaxy-user] tophat error   Jennifer Jackson
• [galaxy-user] SNP and INDEL detection   Jennifer Jackson
• [galaxy-user] tophat error   Jennifer Jackson
• [galaxy-user] Question about formattung mouse (mm9) GTF   Jennifer Jackson
• [galaxy-user] My tophat jobs are stuck in the queue   Jennifer Jackson
• [galaxy-user] using lastz   Jennifer Jackson
• [galaxy-user] Problem in randomly selecting sequences?   Jennifer Jackson
• [galaxy-user] customizing mm9 mouse reference genome and then using that as the ref genome when uploading Illumina data   Jennifer Jackson
• [galaxy-user] question about sorting barcoded sequences   Jennifer Jackson
• [galaxy-user] How to combine two Reference Genome (Files) In Galaxy?   Jennifer Jackson
• [galaxy-user] Query regarding RNA-Seq data analysis   Jennifer Jackson
• [galaxy-user] analysis of 454 data   Jennifer Jackson
• [galaxy-user] Can we continue the workflow from some of the steps?   Jennifer Jackson
• [galaxy-user] Galaxy Main public instance: data and job quotas   Jennifer Jackson
• [galaxy-user] data sizes & delete vs delete permanently   Jennifer Jackson
• [galaxy-user] Reducing overall data footprint   Jennifer Jackson
• [galaxy-user] Allelic RNA-seq!   Jennifer Jackson
• [galaxy-user] Extract genomic DNA-strand information is not recognized   Jennifer Jackson
• [galaxy-user] Sequences are not currently available for the specified build   Jennifer Jackson
• [galaxy-user] Names for genes in RNA-Seq analysis   Jennifer Jackson
• [galaxy-user] Names for genes in RNA-Seq analysis   Jennifer Jackson
• [galaxy-user] Names for genes in RNA-Seq analysis   Jennifer Jackson
• [galaxy-user] October 25, 2011 Galaxy Development News Brief   Jennifer Jackson
• [galaxy-user] Cistrome   Jennifer Jackson
• [galaxy-user] Problem with bam and/or bai files   Jennifer Jackson
• [galaxy-user] Local instance data upload   Jennifer Jackson
• [galaxy-user] how to merge multiple fastq files   Jennifer Jackson
• [galaxy-user] get data through FTP site   Jennifer Jackson
• [galaxy-user] New Genome Load Request   Jennifer Jackson
• [galaxy-user] GATK   Jennifer Jackson
• [galaxy-user] how to transfer gene id into protein id   Jennifer Jackson
• [galaxy-user] how to merge multiple files   Jennifer Jackson
• [galaxy-user] how to merge multiple fastq files   Jennifer Jackson
• [galaxy-user] how to merge multiple fastq files   Jennifer Jackson
• [galaxy-user] GATK   Jennifer Jackson
• [galaxy-user] Operate on genomic intervals   Jennifer Jackson
• [galaxy-user] RNAseq Clostridium butyricum   Jennifer Jackson
• [galaxy-user] Names for genes in RNA-Seq analysis   Jennifer Jackson
• [galaxy-user] how to manage mailing list subscriptions   Jennifer Jackson
• [galaxy-user] how to transfer gene id into protein id   Jennifer Jackson
• [galaxy-user] (no subject)   Mahjoubeh Jalali
• [galaxy-user] Cost   Tibor Kiss
• [galaxy-user] FASTQ Quality Trimmer for PE Illumina?   Kuehn, Joanna S [V MPM]
• [galaxy-user] Problem with new tool shed   Greg Von Kuster
• [galaxy-user] Problem with new tool shed   Greg Von Kuster
• [galaxy-user] Problem with new tool shed   Greg Von Kuster
• [galaxy-user] Problem with new tool shed   Greg Von Kuster
• [galaxy-user] Permissions and private roles   Greg Von Kuster
• [galaxy-user] Permissions and private roles   Greg Von Kuster
• [galaxy-user] Permissions and private roles   Greg Von Kuster
• [galaxy-user] Permissions and private roles   Greg Von Kuster
• [galaxy-user] [galaxy-dev] Importing existing data into Galaxy   Greg Von Kuster
• [galaxy-user] [galaxy-dev] Importing existing data into Galaxy   Greg Von Kuster
• [galaxy-user] Adding new tools in Galaxy   Makis Ladoukakis
• [galaxy-user] Adding new tools in Galaxy   Makis Ladoukakis
• [galaxy-user] how to merge multiple fastq files   Kevin Lam
• [galaxy-user] one error while installing galaxy   Li, Jilong (MU-Student)
• [galaxy-user] FW: one error while installing galaxy   Li, Jilong (MU-Student)
• [galaxy-user] how to transfer gene id into protein id   Li, Jilong (MU-Student)
• [galaxy-user] how to transfer gene id into protein id   Li, Jilong (MU-Student)
• [galaxy-user] question about sorting barcoded sequences   Qingquan Liu
• [galaxy-user] Galaxy-Condor Permission Denied   Oren Livne
• [galaxy-user] Galaxy-Condor Permission Denied   Oren Livne
• [galaxy-user] Galaxy-Condor Permission Denied   Oren Livne
• [galaxy-user] Galaxy-Condor Permission Denied   Oren Livne
• [galaxy-user] Subscribing to Job Status Events   Oren Livne
• [galaxy-user] Problem starting galaxy on Cygwin   Oren Livne
• [galaxy-user] Importing existing data into Galaxy   Oren Livne
• [galaxy-user] [galaxy-dev] Importing existing data into Galaxy   Oren Livne
• [galaxy-user] 11. Question about formatting mouse (mm9) GTF (shamsher jagat) (galaxy-user Digest, Vol 64, Issue 11)   Lozach, Jean
• [galaxy-user] My tophat jobs are stuck in the queue   Daniel Lundin
• [galaxy-user] Map with Bowtie for Illumina (version 1.1.2)   KNIGHT M.R.
• [galaxy-user] Map with Bowtie for Illumina (version 1.1.2)   KNIGHT M.R.
• [galaxy-user] Downloading files   KNIGHT M.R.
• [galaxy-user] Get only repeatmasked exons   Managadze, David (NIH/NLM/NCBI) [F]
• [galaxy-user] sample for video for example 3 in ngs analyses in galaxy   Linda McMahan
• [galaxy-user] data libraries   Hilary Morrison
• [galaxy-user] file deletion   Hilary Morrison
• [galaxy-user] cluster install   Oleksandr Moskalenko
• [galaxy-user] Amazon AMI   Daniel Muehlschlegel
• [galaxy-user] GATK   Muehlschlegel, Jochen D.,M.D.
• [galaxy-user] save/export image from workflow editor?   Anton Nekrutenko
• [galaxy-user] Get only repeatmasked exons   Anton Nekrutenko
• [galaxy-user] How to use Galaxy   Anton Nekrutenko
• [galaxy-user] Dataset not appearing as available input to SAM analyses   James Nelson
• [galaxy-user] How to count reads in 200bp windows and save the output per chromosome?   Di Nguyen
• [galaxy-user] Names for genes in RNA-Seq analysis   GANDRILLON OLIVIER
• [galaxy-user] Over disk quota   GANDRILLON OLIVIER
• [galaxy-user] Names for genes in RNA-Seq analysis   GANDRILLON OLIVIER
• [galaxy-user] Removing low quality reads   Getiria Onsongo
• [galaxy-user] SNPEff 2.0.2 Wrapper Problem / Partial Fix   John David Osborne
• [galaxy-user] Galaxy-Condor Permission Denied   Nathan Panike
• [galaxy-user] Galaxy-Condor Permission Denied   Nathan Panike
• [galaxy-user] Galaxy-Condor Permission Denied   Nathan Panike
• [galaxy-user] run tophat in galaxy   Peng, Tao
• [galaxy-user] Can we continue the workflow from some of the steps?   Cinto Queky
• [galaxy-user] Queuepool limit problem   Cinto Queky
• [galaxy-user] Deletions   Laura Reinholdt
• [galaxy-user] Deleted history   Herve Rhinn
• [galaxy-user] Problem with bam and/or bai files   Jim Robinson
• [galaxy-user] Problem with bam and/or bai files   Jim Robinson
• [galaxy-user] SNP and INDEL detection   Gabriela Ronquillo-Lopez
• [galaxy-user] Extract genomic DNA-strand information is not recognized   Sarah
• [galaxy-user] Operate on genomic intervals   Sarah
• [galaxy-user] CompleteGenomics publicly available genomes.   Melissa A. Wilson Sayres
• [galaxy-user] Names for genes in RNA-Seq analysis   Carl Schmidt
• [galaxy-user] aligning long reads   Shalabh Sharma
• [galaxy-user] Splitting a file   Daniel Sher
• [galaxy-user] Problem in randomly selecting sequences?   Daniel Sher
• [galaxy-user] Problem in randomly selecting sequences?   Daniel Sher
• [galaxy-user] Sequences are not currently available for the specified build   Mark Silby
• [galaxy-user] Problem launching cloud instance   Clare Sloggett
• [galaxy-user] Problem launching cloud instance   Clare Sloggett
• [galaxy-user] Problem launching cloud instance   Clare Sloggett
• [galaxy-user] Regarding perl script   Shambhavi Srivastava
• [galaxy-user] cluster install   Joshua Udall
• [galaxy-user] cluster install   Joshua Udall
• [galaxy-user] Permissions and private roles   Anthony Underwood
• [galaxy-user] Permissions and private roles   Anthony Underwood
• [galaxy-user] Permissions and private roles   Anthony Underwood
• [galaxy-user] Permissions and private roles   Anthony Underwood
• [galaxy-user] Permissions and private roles   Anthony Underwood
• [galaxy-user] Permissions and private roles   Anthony Underwood
• [galaxy-user] using lastz   N. Walsh
• [galaxy-user] 1000 genome variant calls   Richard Mark White
• [galaxy-user] permanently delete problem   Richard Mark White
• [galaxy-user] permanently delete problem   Richard Mark White
• [galaxy-user] Problem uploading files to Cloudman Galaxy   Kevin Williamson
• [galaxy-user] CompleteGenomics publicly available genomes.   Ronald Worthington
• [galaxy-user] How to combine two Reference Genome (Files) In Galaxy?   Binbin You
• [galaxy-user] Possible to browse local filesystem   alessandro albiero
• [galaxy-user] fastq groomer   arabidopsis
• [galaxy-user] fastq groomer   arabidopsis
• [galaxy-user] analysis of 454 data   bassanio
• [galaxy-user] analysis of 454 data   bassanio
• [galaxy-user] analysis of 454 data   bassanio
• [galaxy-user] How to use Galaxy   Boaz iga
• [galaxy-user] QUESTION   dtrejo at ira.cinvestav.mx
• [galaxy-user] BED to BAM conversion in Galaxy   shamsher jagat
• [galaxy-user] BED to BAM conversion in Galaxy   shamsher jagat
• [galaxy-user] Question about formattung mouse (mm9) GTF   shamsher jagat
• [galaxy-user] Fwd: Cufflinks transcript-extract   vasu punj
• [galaxy-user] Posting in the List   santhi ramachandran
• [galaxy-user] Query regarding RNA-Seq data analysis   santhi ramachandran
• [galaxy-user] tophat error   zohra saci
• [galaxy-user] tophat error   zohra saci
• [galaxy-user] Memory issues while using Galaxy   prashant singh
• [galaxy-user] cufflinks error   jh yu
• [galaxy-user] version tophat and cufflinks   dongdong zhaoweiming
• [galaxy-user] select tophat and cufflinks   dongdong zhaoweiming
• [galaxy-user] cufflinks set parameters   dongdong zhaoweiming
• [galaxy-user] Cufflinks transcript-extract   dongdong zhaoweiming

Last message date: Mon Oct 31 19:12:36 EDT 2011
Archived on: Mon Oct 31 19:13:35 EDT 2011

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