November 2011 Archives by date

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Starting: Tue Nov 1 12:58:14 EDT 2011
Ending: Wed Nov 30 17:26:09 EST 2011
Messages: 207

• [galaxy-user] fastq groomer   Kevin Lam
• [galaxy-user] fastq groomer   Peter Cock
• [galaxy-user] Cannot get rid of custom build error   James Vincent
• [galaxy-user] RNAseq Helicobacter pylori   Jennifer Jackson
• [galaxy-user] RNA-seq with Staphylococcus aureus strain Newman   Jennifer Jackson
• [galaxy-user] Dataset not appearing as available input to SAM analyses   Jennifer Jackson
• [galaxy-user] fastq groomer   Jennifer Jackson
• [galaxy-user] Genome database/builds missing?   Jennifer Jackson
• [galaxy-user] Names for genes in RNA-Seq analysis   Jennifer Jackson
• [galaxy-user] get data through FTP site   Jennifer Jackson
• [galaxy-user] fastq groomer   Richard Mark White
• [galaxy-user] fastq groomer   Bob Harris
• [galaxy-user] Cannot get rid of custom build error   Jennifer Jackson
• [galaxy-user] Names for genes in RNA-Seq analysis   GANDRILLON OLIVIER
• [galaxy-user] Galaxy tracker browser freezes when zoomed in   Steve
• [galaxy-user] Expected Transcriptome BLAST   Colicchio, Jack M
• [galaxy-user] Expected Transcriptome BLAST   Colicchio, Jack M
• [galaxy-user] Removing low quality reads   Jennifer Jackson
• [galaxy-user] Galaxy tracker browser freezes when zoomed in   Jennifer Jackson
• [galaxy-user] Expected Transcriptome BLAST   Jennifer Jackson
• [galaxy-user] Dataset not appearing as available input to SAM analyses   Jennifer Jackson
• [galaxy-user] Downloading files   Jennifer Jackson
• [galaxy-user] fastx reverse compliment failed - gzip: stdout: Broken pipe   Lucinda Lawson
• [galaxy-user] data format   Jennifer Jackson
• [galaxy-user] cufflinks FPKM   Li, Jilong (MU-Student)
• [galaxy-user] Operate on genomic intervals: Join   Stephen Eacker
• [galaxy-user] cufflinks set parameters   Jennifer Jackson
• [galaxy-user] cufflinks error   Jennifer Jackson
• [galaxy-user] Help with analysis   Alex Daffornel
• [galaxy-user] FASTQ joiner   Matthew Herron
• [galaxy-user] Removal of duplicates and Cufflinks usage   Lizex Husselmann
• [galaxy-user] Removal of duplicates and Cufflinks usage   Jeremy Goecks
• [galaxy-user] Question about Cuffdiff   Alessia D
• [galaxy-user] Question about Cuffdiff   Jennifer Jackson
• [galaxy-user] BWA install problem   Christopher Callaway
• [galaxy-user] BWA install problem   Jennifer Jackson
• [galaxy-user] Uploading Genome from Ensembl   Scroggins, Sheena
• [galaxy-user] Bed to Wiggle?   shamsher jagat
• [galaxy-user] Bed to Wiggle?   Jennifer Jackson
• [galaxy-user] Uploading Genome from Ensembl   Hiram Clawson
• [galaxy-user] (no subject)   Xiangming Ding
• [galaxy-user] question about uploading data through URL method   Xiangming Ding
• [galaxy-user] question about uploading data through URL method   Simao Lee
• [galaxy-user] question about uploading data through URL method   Jennifer Jackson
• [galaxy-user] downloading (and renaming) output files from Galaxy public server   Richard Mark White
• [galaxy-user] downloading (and renaming) output files from Galaxy public server   Jennifer Jackson
• [galaxy-user] Data gets deleted from public server   shamsher jagat
• [galaxy-user] Data gets deleted from public server   Nate Coraor
• [galaxy-user] Cuffcompare error   Alessia D
• [galaxy-user] Data gets deleted from public server   shamsher jagat
• [galaxy-user] question about uploading data through URL method   Xiangming Ding
• [galaxy-user] Cufflink error   Lizex Husselmann
• [galaxy-user] number of concurrent jobs/user   Petr Novak
• [galaxy-user] SNPeff tool?   Laura Elizabeth Spoor
• [galaxy-user] Data gets deleted from public server   Jennifer Jackson
• [galaxy-user] question about uploading data through URL method   Jennifer Jackson
• [galaxy-user] SNPeff tool?   Dannon Baker
• [galaxy-user] SNPeff tool?   David Matthews
• [galaxy-user] SNPeff tool?   Chorny, Ilya
• [galaxy-user] SNPeff tool?   David Matthews
• [galaxy-user] Uploading Genome from Ensembl   Jennifer Jackson
• [galaxy-user] Cuffcompare error   Jennifer Jackson
• [galaxy-user] SNPeff tool?   Chorny, Ilya
• [galaxy-user] Cufflink error   Jennifer Jackson
• [galaxy-user] Data gets deleted from public server   shamsher jagat
• [galaxy-user] Data gets deleted from public server   Jennifer Jackson
• [galaxy-user] adaptor trimming   Soetkin Versteyhe
• [galaxy-user] adaptor trimming   Jennifer Jackson
• [galaxy-user] fastq joiner problem   Matthew Herron
• [galaxy-user] fastq joiner problem   Lucinda Lawson
• [galaxy-user] selecting reads at random from fastq file   Austin Paul
• [galaxy-user] CEAS in Galaxy   shamsher jagat
• [galaxy-user] selecting reads at random from fastq file   Peter Cock
• [galaxy-user] selecting reads at random from fastq file   Austin Paul
• [galaxy-user] fastq joiner problem   Jennifer Jackson
• [galaxy-user] selecting reads at random from fastq file   Jennifer Jackson
• [galaxy-user] CEAS in Galaxy   Jennifer Jackson
• [galaxy-user] selecting reads at random from fastq file   Peter Cock
• [galaxy-user] more on varying number of output files in xml   Nicholas Robinson
• [galaxy-user] selecting reads at random from fastq file   Hans-Rudolf Hotz
• [galaxy-user] selecting reads at random from fastq file   David Matthews
• [galaxy-user] selecting reads at random from fastq file   Bob Harris
• [galaxy-user] fetch sequence functionality   Lawrence Mckechnie
• [galaxy-user] CEAS in Galaxy   Ian Donaldson
• [galaxy-user] CEAS in Galaxy   Jennifer Jackson
• [galaxy-user] selecting reads at random from fastq file   Peter Cock
• [galaxy-user] more on varying number of output files in xml   Ross
• [galaxy-user] Application error   Palmer, Sarah
• [galaxy-user] selecting reads at random from fastq file   Kevin Lam
• [galaxy-user] Application error   Ross
• [galaxy-user] visualization   wu yijin
• [galaxy-user] TopHat/Cufflinks visualization   Alessia D
• [galaxy-user] Galaxy local install problems understanding where to put mouse ref seq data to populate ref genome in BWA   Christopher Callaway
• [galaxy-user] TopHat/Cufflinks visualization   shamsher jagat
• [galaxy-user] TopHat/Cufflinks visualization   Jennifer Jackson
• [galaxy-user] Galaxy local install problems understanding where to put mouse ref seq data to populate ref genome in BWA   Jennifer Jackson
• [galaxy-user] Deleting a Galaxy User   Oren Livne
• [galaxy-user] visualization   Jennifer Jackson
• [galaxy-user] Question about building a reference genome index using Bowtie   William Light
• [galaxy-user] Genetrack-Indexer/PeakPredictor   Stefanie Ververs
• [galaxy-user] Genetrack-Indexer/PeakPredictor   Daniel Blankenberg
• [galaxy-user] Deleting a Galaxy User   Jennifer Jackson
• [galaxy-user] Genetrack-Indexer/PeakPredictor   Istvan Albert
• [galaxy-user] Question about file formats   Rena Zheng
• [galaxy-user] Genetrack-Indexer/PeakPredictor   Daniel Blankenberg
• [galaxy-user] Question about file formats   Peter Cock
• [galaxy-user] my data files are missing from drop down menus   Maya Kasowski
• [galaxy-user] my data files are missing from drop down menus   Dannon Baker
• [galaxy-user] Lastz   Andrew South
• [galaxy-user] Lastz   Nate Coraor
• [galaxy-user] Cufflinks Annotation problem   Bidwell, Christopher A.
• [galaxy-user] Lastz   Nate Coraor
• [galaxy-user] MA2C peak calling or nimbelgen chip on chip analysis   shamsher jagat
• [galaxy-user] Cufflinks Annotation problem   Jennifer Jackson
• [galaxy-user] BWA question on Mac OS X 10.7.2   Christopher Callaway
• [galaxy-user] Trouble in extracting species on maf imported from UCSC   4urelie K
• [galaxy-user] BWA question on Mac OS X 10.7.2   Jennifer Jackson
• [galaxy-user] Trouble in extracting species on maf imported from UCSC   Jennifer Jackson
• [galaxy-user] MA2C peak calling or nimbelgen chip on chip analysis   Jennifer Jackson
• [galaxy-user] Adding new data source   Joachim Baran
• [galaxy-user] Lastz   Andrew South
• [galaxy-user] Cufflinks Annotation problem   Xiangming Ding
• [galaxy-user] Asynchronous data source   Joachim Baran
• [galaxy-user] generic filenames with Export to File   Danielle Lemay
• [galaxy-user] Asynchronous data source   Joachim Baran
• [galaxy-user] (no subject)   gaurav thareja
• [galaxy-user] Regarding .exe file   Shambhavi Srivastava
• [galaxy-user] generic filenames with Export to File   Jeremy Goecks
• [galaxy-user] generic filenames with Export to File   Jeremy Goecks
• [galaxy-user] Lastz   Nate Coraor
• [galaxy-user] Asynchronous data source   Daniel Blankenberg
• [galaxy-user] Asynchronous data source   Joachim Baran
• [galaxy-user] trimming   dtrejo at ira.cinvestav.mx
• [galaxy-user] Trouble in extracting species on maf imported from UCSC   Jennifer Jackson
• [galaxy-user] trimming   Jennifer Jackson
• [galaxy-user] https://galaxy.jgi-psf.org/   Chauhan, Archana
• [galaxy-user] https://galaxy.jgi-psf.org/   Peter Cock
• [galaxy-user] enabling regular users to upload large data volumes to a local Galaxy server   Yury V Bukhman
• [galaxy-user] enabling regular users to upload large data volumes to a local Galaxy server   Chorny, Ilya
• [galaxy-user] https://galaxy.jgi-psf.org/   Jennifer Jackson
• [galaxy-user] mapping tags   Soetkin Versteyhe
• [galaxy-user] Regarding .exe file   graham etherington (TSL)
• [galaxy-user] Save These Dates! July 25-27: Galaxy Community Conference   Dave Clements
• [galaxy-user] GATK wrapper in Galaxy   Mike Dufault
• [galaxy-user] clipping from 5' end   Soetkin Versteyhe
• [galaxy-user] clipping from 5' end   Geert Vandeweyer
• [galaxy-user] clipping from 5' end   Jennifer Jackson
• [galaxy-user] RV: Visual and Conputational Analysis of positive sites in chip-chip data   Mónica Pérez Alegre
• [galaxy-user] Changing Bowtie parameters in TopHat   Jeremy Coate
• [galaxy-user] Changing Bowtie parameters in TopHat   Jeremy Goecks
• [galaxy-user] GATK   Metge, Franziska
• [galaxy-user] Changing Bowtie parameters in TopHat   Jeremy Coate
• [galaxy-user] RV: Visual and Conputational Analysis of positive sites in chip-chip data   Abhay Krishna
• [galaxy-user] RV: Visual and Conputational Analysis of positive sites in chip-chip data   shamsher jagat
• [galaxy-user] Using Galaxy Cloudman for a workshop   Clare Sloggett
• [galaxy-user] Using Galaxy Cloudman for a workshop   Enis Afgan
• [galaxy-user] Changing Bowtie parameters in TopHat   Jeremy Goecks
• [galaxy-user] Using Galaxy Cloudman for a workshop   Jeremy Goecks
• [galaxy-user] GATK   Jennifer Jackson
• [galaxy-user] Tools appearing without inputs in workflow editor   Paul-Michael Agapow
• [galaxy-user] GATK   Daniel Blankenberg
• [galaxy-user] Using Galaxy Cloudman for a workshop   Clare Sloggett
• [galaxy-user] Using Galaxy Cloudman for a workshop   Ravi Madduri
• [galaxy-user] Using Galaxy Cloudman for a workshop   Clare Sloggett
• [galaxy-user] Using Galaxy Cloudman for a workshop   Jeremy Goecks
• [galaxy-user] combine data   dongdong zhaoweiming
• [galaxy-user] combine data   Kevin L
• [galaxy-user] combine data   Jennifer Jackson
• [galaxy-user] Gene Ontology Help   Nicole Lynn Jacobs
• [galaxy-user] Fwd: BioMart - DATABASE Special Issue   Arek Kasprzyk
• [galaxy-user] November 18, 2011 Galaxy Development News Brief   Jennifer Jackson
• [galaxy-user] Running shell script   Toqa Manasrah
• [galaxy-user] GATK wrapper in Galaxy   Jennifer Jackson
• [galaxy-user] Using Galaxy Cloudman for a workshop   Clare Sloggett
• [galaxy-user] tools for exome sequence   shamsher jagat
• [galaxy-user] Galaxy test won't run a bwa job   Carlos Borroto
• [galaxy-user] Galaxy test won't run a bwa job   Jennifer Jackson
• [galaxy-user] Galaxy test won't run a bwa job   Carlos Borroto
• [galaxy-user] Galaxy test won't run a bwa job   Mike Dufault
• [galaxy-user] Galaxy test won't run a bwa job   Carlos Borroto
• [galaxy-user] barcode splitter and clustering analyses?   Simon Bulman
• [galaxy-user] Upload executable in galaxy   Giota Kottara
• [galaxy-user] Unable to run SICER or Find Peaks   Anupam Paliwal
• [galaxy-user] Question regarding: FASTQ Quality Trimmer   Rahul Kanwar
• [galaxy-user] 'Draw quality score Boxplot' error   Caroline Proux
• [galaxy-user] Galaxy Upload tool   Toqa Manasrah
• [galaxy-user] Error running tool   Toqa Manasrah
• [galaxy-user] An update to Galaxy CloudMan   Enis Afgan
• [galaxy-user] Unable to run SICER or Find Peaks   Daniel Blankenberg
• [galaxy-user] Question regarding: FASTQ Quality Trimmer   Daniel Blankenberg
• [galaxy-user] 'Draw quality score Boxplot' error   Avik Datta
• [galaxy-user] An update to Galaxy CloudMan   Ravi Madduri
• [galaxy-user] barcode splitter and clustering analyses?   Jennifer Jackson
• [galaxy-user] 'Draw quality score Boxplot' error   graham etherington (TSL)
• [galaxy-user] 'Draw quality score Boxplot' error   Peter Cock
• [galaxy-user] Creating or Downloading GTF files for use with Cuffcompare   Daniel Sher
• [galaxy-user] Chip-seq data   Giuseppe Petrosino
• [galaxy-user] Unable to run SICER or Find Peaks   Daniel Blankenberg
• [galaxy-user] Random Intervals ?   Vincent Joseph Lynch
• [galaxy-user] Postdoctoral opening in College Park   Charles Delwiche
• [galaxy-user] Patch for better FASTQ description handling   Florent Angly
• [galaxy-user] mapping tags   Jennifer Jackson
• [galaxy-user] Chip-seq data   graham etherington (TSL)
• [galaxy-user] disk quota not updating   Richard Mark White
• [galaxy-user] disk quota not updating   Jennifer Jackson
• [galaxy-user] disk quota not updating   Richard Mark White
• [galaxy-user] disk quota not updating   Jennifer Jackson

Last message date: Wed Nov 30 17:26:09 EST 2011
Archived on: Wed Nov 30 17:26:15 EST 2011

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