[galaxy-user] Galaxy test won't run a bwa job

[Carlos Borroto]

Thanks Mike, that's what I ended doing.

On Tue, Nov 22, 2011 at 4:32 PM, Mike Dufault <dufaultm at yahoo.com> wrote:

> Hi Carlos,
>
> You can always run your BWA on the Main Galaxy and then import the data
> directly into the Test Galaxy using the http: address; no need to download
> to your local machine.
>
> The http: address can be found by by selecting properties on the disk
> icon. Instead of downloading, you can just copy the http:.
>
> I hope this helps,
> Mike
>
> --- On *Tue, 11/22/11, Carlos Borroto <carlos.borroto at gmail.com>* wrote:
>
>
> From: Carlos Borroto <carlos.borroto at gmail.com>
> Subject: Re: [galaxy-user] Galaxy test won't run a bwa job
> To: "Jennifer Jackson" <jen at bx.psu.edu>
> Cc: galaxy-user at lists.bx.psu.edu
> Date: Tuesday, November 22, 2011, 3:12 PM
>
>
> Hi Jen,
>
> I did as you recommended a rerun my job, but after 2hrs is still waiting.
>
> This is my history if that helps:
> http://test.g2.bx.psu.edu/u/cjav/h/gatk---hg19---example
>
> Regards,
> Carlos
>
> On Tue, Nov 22, 2011 at 12:30 PM, Jennifer Jackson <jen at bx.psu.edu<http://mc/compose?to=jen@bx.psu.edu>>
> wrote:
> > Hello Carlos,
> >
> > The NGS cluster was down yesterday for maintenance. Restarting the BWA
> job
> > should initiate the run.
> >
> > Hopefully this helps,
> >
> > Jen
> > Galaxy team
> >
> > On 11/22/11 7:56 AM, Carlos Borroto wrote:
> >>
> >> Hi,
> >>
> >> I'm trying to test a workflow using tools only available on the test
> >> server, for this I have uploaded a limited subset of my data that
> >> should run fairly quickly. The first step is a BWA mapping, but the
> >> job has being in the queue since yesterday. Is it fine to run this
> >> kind of test there?
> >>
> >> Thanks,
> >> Carlos
> >> ___________________________________________________________
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> > --
> > Jennifer Jackson
> > http://usegalaxy.org
> > http://galaxyproject.org/wiki/Support
> >
>
> ___________________________________________________________
> The Galaxy User list should be used for the discussion of
> Galaxy analysis and other features on the public server
> at usegalaxy.org.  Please keep all replies on the list by
> using "reply all" in your mail client.  For discussion of
> local Galaxy instances and the Galaxy source code, please
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>
>   http://lists.bx.psu.edu/listinfo/galaxy-dev
>
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>
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