June 2011 Archives by thread

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Starting: Wed Jun 1 12:02:42 EDT 2011
Ending: Thu Jun 30 19:10:14 EDT 2011
Messages: 218

• [galaxy-user] FastQ Groomer and Compute Quality Statistics   John David Osborne
  • [galaxy-user] FastQ Groomer and Compute Quality Statistics   Peter Cock
  • [galaxy-user] FastQ Groomer and Compute Quality Statistics   Ross
    • [galaxy-user] FastQ Groomer and Compute Quality Statistics   John David Osborne
      • [galaxy-user] FastQ Groomer and Compute Quality Statistics   Ross
  • [galaxy-user] Loading files to local Galaxy   Tilahun Abebe
• [galaxy-user] suggestion for multithreading   Nate Coraor
  • [galaxy-user] suggestion for multithreading   Peter Cock
    • [galaxy-user] suggestion for multithreading   Nate Coraor
      • [galaxy-user] suggestion for multithreading   Peter Cock
      • [galaxy-user] suggestion for multithreading   Nate Coraor
      • [galaxy-user] suggestion for multithreading   Louise-Amélie Schmitt
      • [galaxy-user] suggestion for multithreading   Nate Coraor
      • [galaxy-user] suggestion for multithreading   Louise-Amélie Schmitt
      • [galaxy-user] suggestion for multithreading   Nate Coraor
      • [galaxy-user] Help with Galaxy Cloudman   Mike Dufault
      • [galaxy-user] Help with Galaxy Cloudman   Enis Afgan
    • [galaxy-user] Ion Torrent Data?   Mike Dufault
• [galaxy-user] TSS list with annotation for Hg19   shamsher jagat
  • [galaxy-user] TSS list with annotation for Hg19   Jennifer Jackson
    • [galaxy-user] TSS list with annotation for Hg19   Jennifer Jackson
• [galaxy-user] Flagstat crashes in non-linear workflows with TORQUE   Louise-Amélie Schmitt
  • [galaxy-user] Flagstat crashes in non-linear workflows with TORQUE   Nate Coraor
• [galaxy-user] UCSC->EMBOSS/fuzznuc->UCSC workflow?   Robert Curtis Hendrickson
  • [galaxy-user] UCSC->EMBOSS/fuzznuc->UCSC workflow?   Jennifer Jackson
• [galaxy-user] substring sequence on coordinate in columns   Michal Stuglik
  • [galaxy-user] substring sequence on coordinate in columns   Jennifer Jackson
    • [galaxy-user] substring sequence on coordinate in columns   Michal Stuglik
      • [galaxy-user] hg19 and hg19patch2   David Matthews
      • [galaxy-user] hg19 and hg19patch2   Will McLaren
      • [galaxy-user] hg19 and hg19patch2   Church, Deanna (NIH/NLM/NCBI) [E]
      • [galaxy-user] hg19 and hg19patch2   Francis Ouellette
• [galaxy-user] LASTZ arguments in "Full parameter list"-mode   Appelt, Uwe
  • [galaxy-user] LASTZ arguments in "Full parameter list"-mode   Bob Harris
    • [galaxy-user] LASTZ arguments in "Full parameter list"-mode   Appelt, Uwe
      • [galaxy-user] Most Popular Linux flavour for Galaxy   Matloob Khushi
      • [galaxy-user] Most Popular Linux flavour for Galaxy   Enis Afgan
      • [galaxy-user] Most Popular Linux flavour for Galaxy   Louise-Amélie Schmitt
      • [galaxy-user] Most Popular Linux flavour for Galaxy   Nate Coraor
      • [galaxy-user] Most Popular Linux flavour for Galaxy   Leandro Hermida
• [galaxy-user] Loading files to local Galaxy   Paul-Michael Agapow
  • [galaxy-user] Loading files to local Galaxy   Nate Coraor
    • [galaxy-user] Loading files to local Galaxy   Tilahun Abebe
      • [galaxy-user] Loading files to local Galaxy   Nate Coraor
• [galaxy-user] Most Popular Linux flavour for Galaxy   Enis Afgan
• [galaxy-user] SNP prioritization pipelines   Radhouane Aniba
  • [galaxy-user] SNP prioritization pipelines   Anton Nekrutenko
• [galaxy-user] UCSC->EMBOSS/fuzznuc->UCSC workflow?   Robert Curtis Hendrickson
• [galaxy-user] Error running cufflinks on Galaxy   David Robinson
  • [galaxy-user] Error running cufflinks on Galaxy   Jennifer Jackson
    • [galaxy-user] Error running cufflinks on Galaxy   admiral.david at gmail.com
    • [galaxy-user] Error running cufflinks on Galaxy   Robert Curtis Hendrickson
      • [galaxy-user] Error running cufflinks on Galaxy   Jennifer Jackson
      • [galaxy-user] Error running cufflinks on Galaxy   Aleks Schein
      • [galaxy-user] Error running cufflinks on Galaxy   Jennifer Jackson
      • [galaxy-user] Error running cufflinks on Galaxy   Aleks Schein
• [galaxy-user] error occurred when converting the SOLID output to fastq   Anton Nekrutenko
  • [galaxy-user] Indel Extraction - Deletion Information   Mike Dufault
    • [galaxy-user] Indel Extraction - Deletion Information   Kelly Vincent
• [galaxy-user] [Fwd: Re: error occurred when converting the SOLID output to fastq]   anton at bx.psu.edu
• [galaxy-user] Galaxy tool error report from johnwu at ibms.sinica.edu.tw   "mailto:galaxy-user" at lists.bx.psu.edu
• [galaxy-user] Cufflinks error in galaxy   吳正華
  • [galaxy-user] Cufflinks error in galaxy   Jeremy Goecks
• [galaxy-user] Converting transcriptomes to proteomes   David Matthews
  • [galaxy-user] Converting transcriptomes to proteomes   John David Osborne
    • [galaxy-user] Converting transcriptomes to proteomes   David Matthews
      • [galaxy-user] Converting transcriptomes to proteomes   Pablo Cingolani
• [galaxy-user] Aligning against Multiple Reference Sequences   John David Osborne
  • [galaxy-user] Aligning against Multiple Reference Sequences   David Matthews
• [galaxy-user] Galaxy tool error report from johnwu at ibms.sinica.edu.tw   galaxy-user at lists.bx.psu.edu
  • [galaxy-user] Galaxy tool error report from johnwu at ibms.sinica.edu.tw   Nate Coraor
• [galaxy-user] extract alignment for a set of genes   Vincent Joseph Lynch
  • [galaxy-user] extract alignment for a set of genes   Jennifer Jackson
• [galaxy-user] cuffcompare error in galaxy   吳正華
  • [galaxy-user] cuffcompare error in galaxy   Carlos Javier Borroto
    • [galaxy-user] cuffcompare error in galaxy   Carlos Javier Borroto
      • [galaxy-user] cuffcompare error in galaxy   Nate Coraor
      • [galaxy-user] cuffcompare error in galaxy   Carlos Javier Borroto
• [galaxy-user] Videos online of the Galaxy community conference 2011   Marc van Driel
  • [galaxy-user] Videos online of the Galaxy community conference 2011   Saha, Rinku
  • [galaxy-user] Videos online of the Galaxy community conference 2011   Dave Clements
• [galaxy-user] program for filtering and trimming data   Joanne Rampersad
  • [galaxy-user] program for filtering and trimming data   Anton Nekrutenko
  • [galaxy-user] program for filtering and trimming data   Ido Tamir
• [galaxy-user] Fastq uploads   Keith Giles
  • [galaxy-user] Fastq uploads   Ross
  • [galaxy-user] Fastq uploads   Anton Nekrutenko
• [galaxy-user] Using a remote cluster   James Vincent
  • [galaxy-user] Using a remote cluster   Ravi Madduri
• [galaxy-user] uploading files via FTP   somy ork
  • [galaxy-user] uploading files via FTP   Nate Coraor
• [galaxy-user] SAM to bigbed   Aleks Schein
  • [galaxy-user] SAM to bigbed   Jennifer Jackson
• [galaxy-user] GenBank Submission - How to Generate Fasta (not fastq) files   John David Osborne
  • [galaxy-user] GenBank Submission - How to Generate Fasta (not fastq) files   Jennifer Jackson
    • [galaxy-user] GenBank Submission - How to Generate Fasta (not fastq) files   John David Osborne
• [galaxy-user] the original subject for the thread   David Wang
• [galaxy-user] can I merge histories?   Robert Curtis Hendrickson
  • [galaxy-user] can I merge histories?   Jennifer Jackson
    • [galaxy-user] can I merge histories?   Robert Curtis Hendrickson
      • [galaxy-user] working collaboratively in a history: How To?   Robert Curtis Hendrickson
      • [galaxy-user] working collaboratively in a history: How To?   Jennifer Jackson
  • [galaxy-user] can I merge histories?   Dannon Baker
• [galaxy-user] software request   Christopher Balakrishnan
  • [galaxy-user] software request   Philippe Lefebvre
• [galaxy-user] MACS   Jennifer Jackson
• [galaxy-user] Error running latest Galaxy Distribution: numpy.dtype exception   Michael Steder
• [galaxy-user] Cufflinks advice   Michael Gooch
  • [galaxy-user] Cufflinks advice   David Matthews
• [galaxy-user] SRMA on a local galaxy instance?   Gong, Henry
  • [galaxy-user] SRMA on a local galaxy instance?   Nate Coraor
    • [galaxy-user] SRMA on a local galaxy instance?   Gong, Henry
• [galaxy-user] galaxy cluster setup   Robert Jackson
  • [galaxy-user] galaxy cluster setup   Nate Coraor
  • [galaxy-user] galaxy cluster setup   Roman Valls
• [galaxy-user] New Galaxy User   gaurav thareja
  • [galaxy-user] New Galaxy User   Louise-Amélie Schmitt
• [galaxy-user] Question about output CuffDiff SplicingDiff   Felix Mayr
  • [galaxy-user] Question about output CuffDiff SplicingDiff   Jeremy Goecks
  • [galaxy-user] Question about output CuffDiff SplicingDiff   Rory Kirchner
• [galaxy-user] AXT and NIB files for AlignSeq.loc   John David Osborne
  • [galaxy-user] AXT and NIB files for AlignSeq.loc   Jennifer Jackson
• [galaxy-user] aspera install on cloud install   Joseph Hargitai
  • [galaxy-user] aspera install on cloud install   Enis Afgan
    • [galaxy-user] aspera install on cloud install   Ravi Madduri
      • [galaxy-user] aspera install on cloud install   Joseph Hargitai
• [galaxy-user] Displaying MACS Peaks at UCSC   Steven Okino
  • [galaxy-user] Displaying MACS Peaks at UCSC   Jennifer Jackson
• [galaxy-user] New Galaxy User   Paul-Michael Agapow
• [galaxy-user] Extract Genomic DNA Problem   Steve Taylor
• [galaxy-user] Galaxy Workshops @ USC June 23-24   Dave Clements
• [galaxy-user] Chip-Seq, Encode Peaks and Galaxy   Radhouane Aniba
  • [galaxy-user] Chip-Seq, Encode Peaks and Galaxy   Jennifer Jackson
    • [galaxy-user] Chip-Seq, Encode Peaks and Galaxy   Jorge Andrade
      • [galaxy-user] Chip-Seq, Encode Peaks and Galaxy   Radhouane Aniba
• [galaxy-user] Galaxy server issues?   David K Crossman
  • [galaxy-user] Galaxy server issues?   Nate Coraor
• [galaxy-user] bed to bigbed conversion   Gijs Santen
  • [galaxy-user] bed to bigbed conversion   Kanwei Li
    • [galaxy-user] bed to bigbed conversion   Gijs Santen
      • [galaxy-user] bed to bigbed conversion   Hiram Clawson
• [galaxy-user] Question please -manhattan plots   Sagi
  • [galaxy-user] Question please -manhattan plots   Ross
• [galaxy-user] Small RNA Mapping   Shayne Bellingham
  • [galaxy-user] Small RNA Mapping   Hans-Rudolf Hotz
• [galaxy-user] How to delete multiple items in libraries?   Louise-Amélie Schmitt
  • [galaxy-user] How to delete multiple items in libraries?   Greg Von Kuster
    • [galaxy-user] How to delete multiple items in libraries?   Louise-Amélie Schmitt
• [galaxy-user] Fwd: uploading error   Assaf Gordon
• [galaxy-user] Extract Genomic DNA Problem   Stephen Taylor
  • [galaxy-user] Extract Genomic DNA Problem   Jeremy Goecks
    • [galaxy-user] Extract Genomic DNA Problem   Stephen Taylor
      • [galaxy-user] Extract Genomic DNA Problem   Jennifer Jackson
      • [galaxy-user] Extract Genomic DNA Problem   John David Osborne
      • [galaxy-user] Extract Genomic DNA Problem   Jennifer Jackson
      • [galaxy-user] Extract Genomic DNA Problem   Stephen Taylor
      • [galaxy-user] Extract Genomic DNA Problem   Fabian Owuor
      • [galaxy-user] newbies   Fabian Owuor
      • [galaxy-user] newbies   Jennifer Jackson
• [galaxy-user] FTP and command line access in Galaxy   Robert Curtis Hendrickson
  • [galaxy-user] FTP and command line access in Galaxy   Peter Cock
    • [galaxy-user] FTP and command line access in Galaxy   Nate Coraor
• [galaxy-user] cuffcompare error in galaxy (Carlos Javier Borroto)   吳正華
• [galaxy-user] Configuring Galaxy Server   gaurav thareja
• [galaxy-user] downloading reference sequences and other questions   Joanne Rampersad
  • [galaxy-user] downloading reference sequences and other questions   Anton Nekrutenko
  • [galaxy-user] downloading reference sequences and other questions   Jennifer Jackson
    • [galaxy-user] downloading reference sequences and other questions   Jennifer Jackson
• [galaxy-user] newbies   Jennifer Jackson
• [galaxy-user] June 23, 2011 Galaxy Development News Brief   Jennifer Jackson
• [galaxy-user] temporary files   Christopher Schroeder
  • [galaxy-user] temporary files   Nate Coraor
• [galaxy-user] Yeast Genome Assembly   Edward Turk
  • [galaxy-user] Yeast Genome Assembly   Jennifer Jackson
    • [galaxy-user] Yeast Genome Assembly   Edward Turk
      • [galaxy-user] Yeast Genome Assembly   Jennifer Jackson
• [galaxy-user] question on cufflinks output   Wen Huang
• [galaxy-user] question on cufflinks output   Wen Huang
  • [galaxy-user] question on cufflinks output   Jeremy Goecks
    • [galaxy-user] question on cufflinks output   YBao
      • [galaxy-user] question on cufflinks output   Jennifer Jackson
• [galaxy-user] Error running cufflinks on Galaxy   Jennifer Jackson
• [galaxy-user] Unable to load FASTA files?   Laura Elizabeth Spoor
  • [galaxy-user] Unable to load FASTA files?   Nicola Nadeau
    • [galaxy-user] Unable to load FASTA files?   Nate Coraor
• [galaxy-user] [galaxy-dev] input security validation   Roman Valls
  • [galaxy-user] [galaxy-dev] input security validation   Nate Coraor
• [galaxy-user] Cuffdiff Question   Jeremy Goecks
  • [galaxy-user] Cuffdiff Question   Kurinji Pandiyan
• [galaxy-user] SIFT analysis input and output file   Charlotte Gueydan
  • [galaxy-user] SIFT analysis input and output file   Jennifer Jackson
• [galaxy-user] cloud instance drops settings on reboot   Joseph Hargitai
  • [galaxy-user] cloud instance drops settings on reboot   Enis Afgan
    • [galaxy-user] cloud instance drops settings on reboot   Joseph Hargitai
      • [galaxy-user] cloud instance drops settings on reboot   Enis Afgan
      • [galaxy-user] cloud instance drops settings on reboot   Joseph Hargitai
      • [galaxy-user] cloud instance drops settings on reboot   Enis Afgan
      • [galaxy-user] cloud instance drops settings on reboot   Oliver Hofmann
      • [galaxy-user] cloud instance drops settings on reboot   Enis Afgan
      • [galaxy-user] cloud instance drops settings on reboot   Oliver Hofmann
      • [galaxy-user] cloud instance drops settings on reboot   Enis Afgan
      • [galaxy-user] cloud instance drops settings on reboot   Joseph Hargitai
• [galaxy-user] Cuffdiff Question   Jeremy Goecks
• [galaxy-user] cloud instance drops settings on reboot   Joseph Hargitai
  • [galaxy-user] cloud instance drops settings on reboot   Enis Afgan
    • [galaxy-user] cloud instance drops settings on reboot   Joseph Hargitai
      • [galaxy-user] cloud instance drops settings on reboot   Enis Afgan
      • [galaxy-user] cloud instance drops settings on reboot   Oliver Hofmann
      • [galaxy-user] cloud instance drops settings on reboot   Joseph Hargitai
• [galaxy-user] Tophat error   Simon Lank
• [galaxy-user] pileup analysis   Anton Nekrutenko
• [galaxy-user] Data changes on usegalaxy.org   Nate Coraor
• [galaxy-user] blastn: NameError: name 'cmd' is not defined   Sergei Ryazansky
  • [galaxy-user] blastn: NameError: name 'cmd' is not defined   Kanwei Li
• [galaxy-user] adding tools to cloud version   Joseph Hargitai
  • [galaxy-user] adding tools to cloud version   Enis Afgan
• [galaxy-user] Adding a reference genome   Jeremy Coate
  • [galaxy-user] Adding a reference genome   Kelly Vincent

Last message date: Thu Jun 30 19:10:14 EDT 2011
Archived on: Thu Jun 30 19:10:20 EDT 2011

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