April 2011 Archives by date

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Starting: Fri Apr 1 09:47:19 EDT 2011
Ending: Sat Apr 30 17:28:28 EDT 2011
Messages: 227

• [galaxy-user] RNA seq analysis and GTF files   Jeremy Goecks
• [galaxy-user] Unsubscription   Anton Nekrutenko
• [galaxy-user] Galaxy server-FTP   Nate Coraor
• [galaxy-user] Published workflows in papers??   Surya Saha
• [galaxy-user] Around Pittsburgh on April 6? Attend the Intro to Galaxy Sessions @ Pitt   Dave Clements
• [galaxy-user] Published workflows in papers??   Bossers, Alex
• [galaxy-user] ce6/WS190 bowtie index   giovanni stefani
• [galaxy-user] where to get indexes for mapping tools   Nate Coraor
• [galaxy-user] where to get indexes for mapping tools   Yury Bukhman
• [galaxy-user] Assemble a consensus genome from NGS data   David Matthews
• [galaxy-user] Analyzing Targeted Resequencing data with Galaxy   Lali
• [galaxy-user] MAF   Laura Iacolina
• [galaxy-user] MAF   Ross
• [galaxy-user] MAF   Eccles, David
• [galaxy-user] Subject: Analyzing Targeted Resequencing data with> Galaxy   Jackie Lighten
• [galaxy-user] Analyzing Targeted Resequencing data with Galaxy   Anton Nekrutenko
• [galaxy-user] MAF   Anton Nekrutenko
• [galaxy-user] convert formats   Sher, Falak
• [galaxy-user] convert formats   Daniel Blankenberg
• [galaxy-user] Analyzing Targeted Resequencing data with Galaxy   Anton Nekrutenko
• [galaxy-user] Analyzing Targeted Resequencing data with Galaxy   Lali
• [galaxy-user] Flagstat on BAM files   Slim Sassi
• [galaxy-user] Flagstat on BAM files   Sean Davis
• [galaxy-user] Flagstat on BAM files   Slim Sassi
• [galaxy-user] Flagstat on BAM files   Sean Davis
• [galaxy-user] Stats on BAM files   Slim Sassi
• [galaxy-user] Analyzing Targeted Resequencing data with Galaxy   Mike Dufault
• [galaxy-user] Analyzing Targeted Resequencing data with Galaxy   Anton Nekrutenko
• [galaxy-user] Analyzing Targeted Resequencing data with Galaxy   Mike Dufault
• [galaxy-user] error on indel analysis   Jennifer Jackson
• [galaxy-user] storage space/processor speed   Jennifer Jackson
• [galaxy-user] Stats on BAM files   Sean Davis
• [galaxy-user] Analyzing Targeted Resequencing data with Galaxy   Sean Davis
• [galaxy-user] Analyzing Targeted Resequencing data with Galaxy   Anton Nekrutenko
• [galaxy-user] Recall: Upload file size and user authorization   Jennifer Jackson
• [galaxy-user] [Genome] UCSC browser, access from Galaxy   Jennifer Jackson
• [galaxy-user] Flagstat on BAM files   Jennifer Jackson
• [galaxy-user] galaxy-user Digest, Vol 58, Issue 3   youngor Cheung
• [galaxy-user] Flagstat crashes in non-linear workflows with TORQUE   Louise-Amélie Schmitt
• [galaxy-user] Flagstat crashes in non-linear workflows with TORQUE   Nate Coraor
• [galaxy-user] Analyzing Targeted Resequencing data with Galaxy   Lali
• [galaxy-user] import problem   Jan Haas
• [galaxy-user] Analyzing Targeted Resequencing data with Galaxy   Lali
• [galaxy-user] Analyzing Targeted Resequencing data with Galaxy   James Taylor
• [galaxy-user] Analyzing Targeted Resequencing data with Galaxy   Lali
• [galaxy-user] Analyzing Targeted Resequencing data with Galaxy   Dannon Baker
• [galaxy-user] galaxy-user Digest, Vol 58, Issue 3   Jennifer Jackson
• [galaxy-user] Regrading SNPs   Jennifer Jackson
• [galaxy-user] Adding the Hydra genome to Galaxy   Kelly Vincent
• [galaxy-user] Adding the Hydra genome to Galaxy   Rob Steele
• [galaxy-user] Privacy Issues   blake haas
• [galaxy-user] (no subject)   sreenivas kurukuti
• [galaxy-user] Regrading SNPs   Mike Dufault
• [galaxy-user] Regrading SNPs -- Nevermind   Mike Dufault
• [galaxy-user] One question about the genome coordinates when using Fetch Sequences   Sean
• [galaxy-user] Regrading SNPs   Thomas Juettemann
• [galaxy-user] [galaxy-bugs] Cufflinks   Jeremy Goecks
• [galaxy-user] [galaxy-bugs] Cufflinks   David Matthews
• [galaxy-user] Regrading SNPs   Jennifer Jackson
• [galaxy-user] MACS   Sher, Falak
• [galaxy-user] [galaxy-bugs] Cufflinks   vasu punj
• [galaxy-user] One question about the genome coordinates when using Fetch Sequences   Jennifer Jackson
• [galaxy-user] BED to GFF   Keith Giles
• [galaxy-user] BED to GFF   Keith E. Giles
• [galaxy-user] BED to GFF   Jennifer Jackson
• [galaxy-user] (no subject)   Jennifer Jackson
• [galaxy-user] BED to GFF   Jennifer Jackson
• [galaxy-user] RNA seq analysis and GTF files   David K Crossman
• [galaxy-user] Privacy Issues   Anton Nekrutenko
• [galaxy-user] RNA seq analysis and GTF files   Jeremy Goecks
• [galaxy-user] RNA seq analysis and GTF files   Jeremy Goecks
• [galaxy-user] Assemble a consensus genome from NGS data   Benjamin Dickins
• [galaxy-user] Analyzing Targeted Resequencing data with Galaxy   Mike Dufault
• [galaxy-user] Analyzing Targeted Resequencing data with Galaxy   Sean Davis
• [galaxy-user] Analyzing Targeted Resequencing data with Galaxy   Anton Nekrutenko
• [galaxy-user] RNA seq analysis and GTF files   David K Crossman
• [galaxy-user] RNAseq and FPKMs per exon   Slim Sassi
• [galaxy-user] RNA seq analysis and GTF files   Jeremy Goecks
• [galaxy-user] RNAseq and FPKMs per exon   Jeremy Goecks
• [galaxy-user] RNAseq and FPKMs per exon   Slim Sassi
• [galaxy-user] Assemble a consensus genome from NGS data   David Matthews
• [galaxy-user] too many list digests   Yury Bukhman
• [galaxy-user] Assemble a consensus genome from NGS data   Benjamin Dickins
• [galaxy-user] April 8, 2011 Galaxy Development News Brief   Jennifer Jackson
• [galaxy-user] too many list digests   Jennifer Jackson
• [galaxy-user] Bowtie vs TopHat   vasu punj
• [galaxy-user] Indel work flow questions   Mike Dufault
• [galaxy-user] Mapping Illumina reads using LASTZ   Kamila Knapik
• [galaxy-user] Mapping Illumina reads using LASTZ   Ann Loraine
• [galaxy-user] 2011 Galaxy Community Conference, May 25-26, Lunteren, The Netherlands   Dave Clements
• [galaxy-user] cufflinks FPKM problem   lishiyong
• [galaxy-user] downstream analysis of cuffdiff out put   Jeremy Goecks
• [galaxy-user] cufflinks FPKM problem   Paul Korir
• [galaxy-user] from Bowtie mapping to gene names   Daniel Elleder
• [galaxy-user] cufflinks FPKM problem   Ryan Golhar
• [galaxy-user] cufflinks FPKM problem   gaohuan
• [galaxy-user] cufflinks FPKM problem   Adam Roberts
• [galaxy-user] cufflinks FPKM problem   李世勇
• [galaxy-user] from Bowtie mapping to gene names   Anton Nekrutenko
• [galaxy-user] Suppress reporting hit number   Hsin-l (Sam) Chiang
• [galaxy-user] Help!!!!!! with Galaxy Cloud!!!!!   Mike Dufault
• [galaxy-user] Reload ".loc" files without restarting the Galaxy server?   Luobin Yang
• [galaxy-user] Help!!!!!! with Galaxy Cloud!!!!!   Enis Afgan
• [galaxy-user] Help!!!!!! with Galaxy Cloud!!!!!   Mike Dufault
• [galaxy-user] Help!!!!!! with Galaxy Cloud!!!!!   Enis Afgan
• [galaxy-user] Help!!!!!! with Galaxy Cloud!!!!!   Mike Dufault
• [galaxy-user] Help!!!!!! with Galaxy Cloud!!!!!   Enis Afgan
• [galaxy-user] Combining tables with different numbers of columns   Peter Cock
• [galaxy-user] Help!!!!!! with Galaxy Cloud!!!!!   vasu punj
• [galaxy-user] Help!!!!!! with Galaxy Cloud!!!!!   Enis Afgan
• [galaxy-user] Problems using aaChanges tool   Evan Schwab
• [galaxy-user] Galaxy's recent problems   Dave Clements
• [galaxy-user] regarding read counts from fastx_clipper   kenlee nakasugi
• [galaxy-user] Help!!!!!! with Galaxy Cloud!!!!!   Mike Dufault
• [galaxy-user] regarding read counts from fastx_clipper   kenlee nakasugi
• [galaxy-user] Help!!!!!! with Galaxy Cloud!!!!!   Enis Afgan
• [galaxy-user] Normalization an dplotting of RPKM/FPKM after cufflink   vasu punj
• [galaxy-user] Normalization an dplotting of RPKM/FPKM after cufflink   Jim Robinson
• [galaxy-user] Normalization an dplotting of RPKM/FPKM after cufflink   Daniel Blankenberg
• [galaxy-user] Nucleotide analysis - GC percentage   Peter Cock
• [galaxy-user] extraction of intervals   pande
• [galaxy-user] Normalization and plotting of RPKM/FPKM after cufflink   vasu punj
• [galaxy-user] extraction of intervals   vasu punj
• [galaxy-user] Nucleotide analysis - GC percentage   Guru Ananda
• [galaxy-user] Nucleotide analysis - GC percentage   Peter Cock
• [galaxy-user] View Running Job from Multiple Computers?   Mike Dufault
• [galaxy-user] Nucleotide analysis - GC percentage   Brad Chapman
• [galaxy-user] View Running Job from Multiple Computers?   Enis Afgan
• [galaxy-user] Nucleotide analysis - GC percentage   Guru Ananda
• [galaxy-user] Nucleotide analysis - GC percentage   Peter Cock
• [galaxy-user] Nucleotide analysis - GC percentage   Tychele
• [galaxy-user] Nucleotide analysis - GC percentage   Douglas Allan
• [galaxy-user] unsubscribe   Widmer, Giovanni F.
• [galaxy-user] Nucleotide analysis - GC percentage   Jeremy Goecks
• [galaxy-user] Nucleotide analysis - GC percentage   Hiram Clawson
• [galaxy-user] RNA seq analysis and GTF files   David K Crossman
• [galaxy-user] too many list digests   Olen Vance Sluder Jr
• [galaxy-user] too many list digests   Dave Clements
• [galaxy-user] Read count issue with clipper/collapser   kenlee nakasugi
• [galaxy-user] Help!!!!!! with Galaxy Cloud!!!!!   Mike Dufault
• [galaxy-user] Read count issue with clipper/collapser   kenlee nakasugi
• [galaxy-user] Nucleotide analysis - GC percentage   Peter Cock
• [galaxy-user] Histogram interpretation   Moein Farshchian
• [galaxy-user] Help!!!!!! with Galaxy Cloud!!!!!   Enis Afgan
• [galaxy-user] Help!!!!!! with Galaxy Cloud!!!!!   Mike Dufault
• [galaxy-user] Help!!!!!! with Galaxy Cloud!!!!!   Enis Afgan
• [galaxy-user] java client   Reema Popley
• [galaxy-user] unsubscribe   nic blouin
• [galaxy-user] database on the cloud   Randall, Thomas (NIH/NIEHS) [C]
• [galaxy-user] unsubscribe   Yi Yin
• [galaxy-user] unsubscribe   David C. Schwartz, Ph.D.
• [galaxy-user] SAM to BAM conversion problem   Kelkar, Hemant
• [galaxy-user] unsubscribe   Dave Clements
• [galaxy-user] SAM to BAM conversion problem   Kelly Vincent
• [galaxy-user] how to generate consensus sequence in galaxy   vaibhav jain
• [galaxy-user] Normalization an dplotting of RPKM/FPKM after cufflink   Jeremy Goecks
• [galaxy-user] Map with Bowtie   Sher, Falak
• [galaxy-user] [Gmod-help] Missing tools in my configured galaxy   Scott Cain
• [galaxy-user] [Gmod-help] Missing tools in my configured galaxy   Ross
• [galaxy-user] unsubscribe   Dave Clements
• [galaxy-user] Map with Bowtie   Jennifer Jackson
• [galaxy-user] database on the cloud   Enis Afgan
• [galaxy-user] database on the cloud   Blake L. Dixon
• [galaxy-user] Map with Bowtie   Jennifer Jackson
• [galaxy-user] how to generate consensus sequence in galaxy   Jennifer Jackson
• [galaxy-user] downstream analysis of cuffdiff out put   Jeremy Goecks
• [galaxy-user] suggestion for multithreading   Louise-Amélie Schmitt
• [galaxy-user] Normalization and plotting of RPKM/FPKM after cufflink   vasu punj
• [galaxy-user] suggestion for multithreading   Blake L. Dixon
• [galaxy-user] BAM files   Edward Dudley
• [galaxy-user] BAM files   Peter Cock
• [galaxy-user] BAM files   Ann Loraine
• [galaxy-user] RNA-seq Galaxy workflow for PE barcoded samples?   Whyte, Jeffrey
• [galaxy-user] Workflows with run time parameters broken?   Peter Cock
• [galaxy-user] Workflows with run time parameters broken?   Dannon Baker
• [galaxy-user] Workflows with run time parameters broken?   Peter Cock
• [galaxy-user] Workflows with run time parameters broken?   Peter Cock
• [galaxy-user] Workflows with run time parameters broken?   David Matthews
• [galaxy-user] Workflows with run time parameters broken?   Dannon Baker
• [galaxy-user] Workflows with run time parameters broken?   David Matthews
• [galaxy-user] Reference genome question, arabidopsis   Rick Westerman
• [galaxy-user] Combining tables with different numbers of columns   Jennifer Jackson
• [galaxy-user] Reload ".loc" files without restarting the Galaxy server?   Jennifer Jackson
• [galaxy-user] Suppress reporting hit number   Jennifer Jackson
• [galaxy-user] ce6/WS190 bowtie index   Jennifer Jackson
• [galaxy-user] Reference genome question, arabidopsis   Jennifer Jackson
• [galaxy-user] ce6/WS190 bowtie index   Jennifer Jackson
• [galaxy-user] get wig file after tophat   Ying Zhang
• [galaxy-user] ce6/WS190 bowtie index   Jennifer Jackson
• [galaxy-user] Reload ".loc" files without restarting the Galaxy server?   Roman Valls
• [galaxy-user] get wig file after tophat   vasu punj
• [galaxy-user] get wig file after tophat   Ann Loraine
• [galaxy-user] Normalization and plotting of RPKM/FPKM after cufflink   Jeremy Goecks
• [galaxy-user] Normalization and plotting of RPKM/FPKM after cufflink   Jim Robinson
• [galaxy-user] get wig file after tophat   Jeremy Goecks
• [galaxy-user] get wig file after tophat   Jim Robinson
• [galaxy-user] How to receive digest only?   Yi Huang
• [galaxy-user] Workflows with run time parameters broken?   Dannon Baker
• [galaxy-user] Reload ".loc" files without restarting the Galaxy server?   Nate Coraor
• [galaxy-user] How to receive digest only?   Olen Vance Sluder Jr
• [galaxy-user] SAM to BAM conversion problem   Kelkar, Hemant
• [galaxy-user] SAM to BAM conversion problem   Jennifer Jackson
• [galaxy-user] Galaxy Community Conference Early Registration Deadline extended to May 1   Dave Clements
• [galaxy-user] VERY URGENT PLEASE.   Mrs Yomun Barakah
• [galaxy-user] importing histories from main   Russell Bell
• [galaxy-user] Mapping to only 3 genes / targeted resequencing / SOLiD4 / short reads   Jennifer Jackson
• [galaxy-user] importing histories from main   Jennifer Jackson
• [galaxy-user] suggestion for multithreading   Louise-Amélie Schmitt
• [galaxy-user] runtime warning with pysam egg   Shantanu Pavgi
• [galaxy-user] Galaxy Community Conference Early Registration Deadline extended to May 1   Dave Clements
• [galaxy-user] Bowtie   Sher, Falak
• [galaxy-user] Problems using aaChanges tool   Evan Schwab
• [galaxy-user] Problems using aaChanges tool   Jennifer Jackson
• [galaxy-user] Bowtie   Jennifer Jackson
• [galaxy-user] mapping with tophat vs. bwa   Austin Paul
• [galaxy-user] mapping with tophat vs. bwa   vasu punj
• [galaxy-user] mapping with tophat vs. bwa   Austin Paul
• [galaxy-user] getting started with galaxy   Joanna Rampersad-ammons
• [galaxy-user] getting started with galaxy   Jennifer Jackson
• [galaxy-user] Move data between histories?   Sam White
• [galaxy-user] mapping with tophat vs. bwa   Kevin Lam
• [galaxy-user] Move data between histories?   Dannon Baker
• [galaxy-user] Move data between histories?   Jennifer Jackson
• [galaxy-user] RNA seq analysis   puvan001 at umn.edu
• [galaxy-user] runtime warning with pysam egg   Nate Coraor
• [galaxy-user] Removing deleted datasets   Simon Lank
• [galaxy-user] Only first 5000 reads are displayed in this tile   Jeremy Chien

Last message date: Sat Apr 30 17:28:28 EDT 2011
Archived on: Mon May 2 10:39:33 EDT 2011

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