[galaxy-user] setting environment for sge scripts

[Andreas Kuntzagk]

Hi,

I followed the advice for multiple installed python versions to set 
~galaxy/galaxy-python/python and set the environment for the galaxy user 
to have that in the PATH

Problem is, when a job is started on GridEngine, it does not use the 
"-V" flag to inherit the environment. So it runs with a different python 
version and more important it does not set LD_LIBRARY_PATH and fails for 
  some tools which need some special lib. (libRblas in this case)
Where can I fix that?

regards, Andreas