[Galaxy-user] FW: Fwd: Fw: FW: Is Galaxy down?
anton at bx.psu.edu
Wed Jun 28 17:38:04 EDT 2006
The Encode db datasource was not loaded into running galaxy. It is
corrected now and running at http://test.g2.bx.psu.edu
Use this URL for testing and let us know.
Department of Biochemistry and Molecular Biology
Center for Comparative Genomics and Bioinformatics
505 Wartik Building
University Park, PA 16802
814 863-6699 FAX
anton at bx.psu.edu
On Jun 28, 2006, at 5:07 PM, Elnitski, Laura ((NIH/NHGRI)) [E] wrote:
> thanks for your help. the message below shows another error we're
> getting. Normally, we'd take more time to investigate the problem
> before asking you, but our manuscript is out for review right now
> and we need resolution of this ASAP. If you think it can only be
> handled on our end, let me know, but if you have suggestions for
> the fix- we would greatly appreciate hearing them.
> Thanks again,
> -----Original Message-----
> From: Umayam, Lowell (NIH/NHGRI) [C]
> Sent: Wed 6/28/2006 5:02 PM
> To: Elnitski, Laura (NIH/NHGRI) [E]; prachi at stanford.edu
> Cc: Wolfsberg, Tyra (NIH/NHGRI) [E]; Baxevanis, Andy (NIH/NHGRI) [E]
> Subject: Re: Fwd: Fw: [Galaxy-user] FW: Is Galaxy down?
> Hi Laura,
> Switched the URL so it's pointing to the correct public port. So now
> it's getting access to the galaxy server but now another error has
> developed. It looks like they must have changed the script on their
> and that it's now taking different arguments. This error is out of my
> scope since I really don't have any expertise with the scripts on
> Galaxy. I think Prachi should look into this.
> Server Error
> URL: http://g2.bx.psu.edu:8085/async/encode_db1
> Module paste.exceptions.errormiddleware:*138* in |__call__|
> Module paste.lint:*65* in |lint_app|
> Module flup.middleware.session:*743* in |__call__|
> Module paste.recursive:*54* in |__call__|
> Module paste.httpexceptions:*619* in |__call__|
> Module paste.wsgilib:*112* in |catch_errors_app|
> Module galaxy.web.framework:*104* in |__call__|
> |<< <http://g2.bx.psu.edu:8085/async/encode_db1#> kwargs *=*
> kwargs*.*update*(* map *)*
> body *=* method*(* trans*,* ****kwargs *)*
> # Now figure out what we got back and try to get it to the browser in
> # a smart way
> ||>> <http://g2.bx.psu.edu:8085/async/encode_db1#>body *=* method*(*
> trans*,* ****kwargs *)*|
> *exceptions.TypeError: default() takes at least 3 non-keyword
> (2 given)
> Tyra Wolfsberg wrote:
>>> Subject: Fw: [Galaxy-user] FW: Is Galaxy down?
>>> Date: Wed, 28 Jun 2006 16:04:56 -0400
>>> Thread-Topic: [Galaxy-user] FW: Is Galaxy down?
>>> Thread-Index: Acaau6b4nybF168GSgeMfrMVI4hHmAAMnsjC
>>> From: "Elnitski, Laura \(NIH/NHGRI\) [E]" <elnitski at mail.nih.gov>
>>> To: "Wolfsberg, Tyra \(NIH/NHGRI\) [E]" <tyra at nhgri.nih.gov>
>>> Hi can you forward this to Lowell? I'm in italy :-)
>>> Sent from my BlackBerry Wireless Device
>>> ----- Original Message -----
>>> From: Nate Coraor <nate at bx.psu.edu>
>>> To: Elnitski, Laura (NIH/NHGRI) [E]
>>> Cc: galaxy-user at bx.psu.edu <galaxy-user at bx.psu.edu>
>>> Sent: Wed Jun 28 10:04:35 2006
>>> Subject: Re: [Galaxy-user] FW: Is Galaxy down?
>>> On Jun 28, 2006, at 7:49 AM, Elnitski, Laura ((NIH/NHGRI)) [E]
>>>> Can you give us any guidance on our ENCODEdb connection problem?
>>> It's on port 8885, although the "public" interface is now just:
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