[Galaxy-user] Latest genome builds?

Mike Schaffer mschaff at bu.edu
Mon Jun 19 10:10:03 EDT 2006


Hi,

It doesn't appear your database has the latest genome builds for  
human (hg18) and mouse (mm8).  Will these be supported soon?

Additionally, I was interested in acquiring human/mouse alignments  
for syntenic introns.  When I tried to acquire this from your site  
for hg17/mm6, it returned a list of alignments, but many of the  
intron sequences are fragmented across many multiple alignment  
entries.  Is it possible to acquire full "global-like" human/mouse  
BLASTZ alignments for intron regions from Galaxy, including gapped  
regions where the sequences aren't alignable?

Thanks for any help you can provide.

Best regards,

Mike Schaffer
Ph.D. Candidate
Bioinformatics Program
Boston University
Boston, MA




More information about the galaxy-user mailing list