March 2011 Archives by author

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Starting: Tue Mar 1 04:00:11 EST 2011
Ending: Thu Mar 31 17:36:46 EDT 2011
Messages: 269

• [galaxy-dev] Galaxy Velvet error: Unknown option -ins_length3   graham etherington (JIC)
• [galaxy-dev] setup.sh missing   Enis Afgan
• [galaxy-dev] testing updates on Galaxy CloudMan   Enis Afgan
• [galaxy-dev] testing updates on Galaxy CloudMan   Enis Afgan
• [galaxy-dev] Galaxy static assets and redirect woes   Paul-Michael Agapow
• [galaxy-dev] [galaxy-user] CpG Masking changing alignment length?   Guru Ananda
• [galaxy-dev] RPM repository for NGS tools in Galaxy   Florent Angly
• [galaxy-dev] Shared a value for multiple set-at-runtime workflow parameters   Dannon Baker
• [galaxy-dev] Shared a value for multiple set-at-runtime workflow parameters   Dannon Baker
• [galaxy-dev] Running a workflow programatically   Dannon Baker
• [galaxy-dev] Running a workflow programatically   Dannon Baker
• [galaxy-dev] Running a workflow programatically   Dannon Baker
• [galaxy-dev] Running a workflow programatically   Dannon Baker
• [galaxy-dev] Running a workflow programatically   Dannon Baker
• [galaxy-dev] [galaxy-user] postgres version 9.0.3   Dannon Baker
• [galaxy-dev] Galaxy prone to XSS and HTML injection attacks   Dannon Baker
• [galaxy-dev] Running a workflow programatically   Dannon Baker
• [galaxy-dev] workflow representation and execution...   Dannon Baker
• [galaxy-dev] requested number of bytes is more than a Python string can hold   Glen Beane
• [galaxy-dev] Upload files from filesystem paths - backwards checkboxes   Glen Beane
• [galaxy-dev] Connecting Galaxy to multiple Remote Clusters?   Glen Beane
• [galaxy-dev] Galaxy job runner queue management questions   Glen Beane
• [galaxy-dev] username or email address from tool   Glen Beane
• [galaxy-dev] importing into history from library   Glen Beane
• [galaxy-dev] Alternative bowtie tools   Glen Beane
• [galaxy-dev] workflow representation and execution...   Glen Beane
• [galaxy-dev] workflow representation and execution...   Glen Beane
• [galaxy-dev] custom datatypes   Daniel Blankenberg
• [galaxy-dev] Alternative bowtie tools   Daniel Blankenberg
• [galaxy-dev] Alternative bowtie tools   Daniel Blankenberg
• [galaxy-dev] extra hack to get own database connection to work?   Daniel Blankenberg
• [galaxy-dev] Applet and path concerns (local instance)   Bonci, Timothy Daniel
• [galaxy-dev] Pass files as url   Bonci, Timothy Daniel
• [galaxy-dev] DB access and passowrd field   Bossers, Alex
• [galaxy-dev] DB access and password field in galaxy   Bossers, Alex
• [galaxy-dev] DB access and password field in galaxy   Bossers, Alex
• [galaxy-dev] [galaxy-user] Around Pittsburgh on April 6? Attend the Intro to Galaxy Sessions @ Pitt   Bottoms, Christopher A
• [galaxy-dev] upload large data file   Ry4an Brase
• [galaxy-dev] divide fq into 2   Ry4an Brase
• [galaxy-dev] Pass files as url   Ry4an Brase
• [galaxy-dev] divide fq into 2   Ry4an Brase
• [galaxy-dev] Galaxy job runner queue management questions   Ry4an Brase
• [galaxy-dev] NoneType dereference on the jobs view   Ry4an Brase
• [galaxy-dev] python job manager   Ry4an Brase
• [galaxy-dev] Running a workflow programatically   Darren Brown
• [galaxy-dev] Running a workflow programatically   Darren Brown
• [galaxy-dev] Running a workflow programatically   Darren Brown
• [galaxy-dev] Running a workflow programatically   Darren Brown
• [galaxy-dev] Running a workflow programatically   Darren Brown
• [galaxy-dev] Running a workflow programatically   Darren Brown
• [galaxy-dev] Running a workflow programatically   Darren Brown
• [galaxy-dev] Dutch Galaxy Hackathon   Freek de Bruijn
• [galaxy-dev] Info button   Brad Chapman
• [galaxy-dev] Fwd: Galaxy process   Brad Chapman
• [galaxy-dev] Fwd: Galaxy process   Brad Chapman
• [galaxy-dev] Error importing BAM file into Library   Brad Chapman
• [galaxy-dev] Fwd: Galaxy process   Brad Chapman
• [galaxy-dev] Enabling iterative test-driven development of tools   John Chilton
• [galaxy-dev] about bx-python and bigwig   Davide Cittaro
• [galaxy-dev] about bx-python and bigwig   Davide Cittaro
• [galaxy-dev] importing annotation with dataset   Davide Cittaro
• [galaxy-dev] [galaxy-user] irc channel for galaxy   Dave Clements
• [galaxy-dev] Workshop on Comparative Genomics, North America 2011   Dave Clements
• [galaxy-dev] In Europe? Galaxy Team Members will be available for a visit   Dave Clements
• [galaxy-dev] Around Pittsburgh on April 6? Attend the Intro to Galaxy Sessions @ Pitt   Dave Clements
• [galaxy-dev] Hiding a tool via tool_conf.xml   Peter Cock
• [galaxy-dev] Shared a value for multiple set-at-runtime workflow parameters   Peter Cock
• [galaxy-dev] Shared a value for multiple set-at-runtime workflow parameters   Peter Cock
• [galaxy-dev] Shared a value for multiple set-at-runtime workflow parameters   Peter Cock
• [galaxy-dev] Shared a value for multiple set-at-runtime workflow parameters   Peter Cock
• [galaxy-dev] QUAL file format(s)   Peter Cock
• [galaxy-dev] Fwd: [Bosc] Bioinformatics Open Source Conference (BOSC 2011)--Call for Abstracts   Peter Cock
• [galaxy-dev] missing setup.sh in galaxy source code   Peter Cock
• [galaxy-dev] possible bug - user log in / browser cache   Peter Cock
• [galaxy-dev] Info button   Peter Cock
• [galaxy-dev] Info button   Peter Cock
• [galaxy-dev] Creating Roles and groups   Peter Cock
• [galaxy-dev] Upload files from filesystem paths - backwards checkboxes   Peter Cock
• [galaxy-dev] Error importing BAM file into Library   Peter Cock
• [galaxy-dev] Problem upgrading DB from 73 to 75 (on SQLite)   Peter Cock
• [galaxy-dev] Upload files from filesystem paths - backwards checkboxes   Peter Cock
• [galaxy-dev] Upload files from filesystem paths - backwards checkboxes   Peter Cock
• [galaxy-dev] Error importing BAM file into Library   Peter Cock
• [galaxy-dev] Problem upgrading DB from 73 to 75 (on SQLite)   Peter Cock
• [galaxy-dev] Problem upgrading DB from 73 to 75 (on SQLite)   Peter Cock
• [galaxy-dev] Problem upgrading DB from 73 to 75 (on SQLite)   Peter Cock
• [galaxy-dev] Metadata recursion error with empty tabular file (with patch)   Peter Cock
• [galaxy-dev] Error importing BAM file into Library   Peter Cock
• [galaxy-dev] History information popup broken on library entries?   Peter Cock
• [galaxy-dev] Metadata recursion error with empty tabular file (with patch)   Peter Cock
• [galaxy-dev] Error importing BAM file into Library   Peter Cock
• [galaxy-dev] Using wget/curl with Tool Shed?   Peter Cock
• [galaxy-dev] Alternative bowtie tools   Peter Cock
• [galaxy-dev] Alternative bowtie tools   Peter Cock
• [galaxy-dev] Default value for data_column not working?   Peter Cock
• [galaxy-dev] Updating BLAST+ wrapper   Peter Cock
• [galaxy-dev] Galaxy static assets and redirect woes   Nate Coraor
• [galaxy-dev] rpy and R   Nate Coraor
• [galaxy-dev] file upload   Nate Coraor
• [galaxy-dev] Inquiring   Nate Coraor
• [galaxy-dev] upload large data file   Nate Coraor
• [galaxy-dev] possible bug - user log in / browser cache   Nate Coraor
• [galaxy-dev] possible bug - user log in / browser cache   Nate Coraor
• [galaxy-dev] Fwd: Galaxy process   Nate Coraor
• [galaxy-dev] Fwd: Galaxy process   Nate Coraor
• [galaxy-dev] parallel computing   Nate Coraor
• [galaxy-dev] Galaxy job runner queue management questions   Nate Coraor
• [galaxy-dev] Problem upgrading DB from 73 to 75 (on SQLite)   Nate Coraor
• [galaxy-dev] Login problem.   Nate Coraor
• [galaxy-dev] Galaxy job runner queue management questions   Nate Coraor
• [galaxy-dev] Problem upgrading DB from 73 to 75 (on SQLite)   Nate Coraor
• [galaxy-dev] python job manager   Nate Coraor
• [galaxy-dev] python job manager   Nate Coraor
• [galaxy-dev] Applet and path concerns (local instance)   Nate Coraor
• [galaxy-dev] galaxy-cloud display data in browser broken   Nate Coraor
• [galaxy-dev] Problem upgrading DB from 73 to 75 (on SQLite)   Nate Coraor
• [galaxy-dev] Problem upgrading DB from 73 to 75 (on SQLite)   Nate Coraor
• [galaxy-dev] Can't save BAM file from Galaxy   Nate Coraor
• [galaxy-dev] new_file_path vs $TMP   Nate Coraor
• [galaxy-dev] Wiki bug for updating local galaxy?   Nate Coraor
• [galaxy-dev] Can't save BAM file from Galaxy   Nate Coraor
• [galaxy-dev] Can't save BAM file from Galaxy   Nate Coraor
• [galaxy-dev] Connecting Galaxy to multiple Remote Clusters?   Joe Cruz
• [galaxy-dev] Sequencer Configuration   Joe Cruz
• [galaxy-dev] rpy and R   Sarah Diehl
• [galaxy-dev] rpy and R   Sarah Diehl
• [galaxy-dev] Server error from history view   Sarah Diehl
• [galaxy-dev] Server error from history view   Sarah Diehl
• [galaxy-dev] [Nbicgalaxy-admin] RPM repository for NGS tools in Galaxy   David van Enckevort
• [galaxy-dev] Missing Page Editor Components   Jeremy Goecks
• [galaxy-dev] cufflinks libz error/warning   Jeremy Goecks
• [galaxy-dev] Missing Page Editor Components   Jeremy Goecks
• [galaxy-dev] cufflinks libz error/warning   Jeremy Goecks
• [galaxy-dev] cufflinks libz error/warning   Jeremy Goecks
• [galaxy-dev] Cufflinks v0.9.3 integration   Goecks, Jeremy
• [galaxy-dev] Login problem.   Ryan Golhar
• [galaxy-dev] cufflinks libz error/warning   Ryan Golhar
• [galaxy-dev] cufflinks libz error/warning   Ryan Golhar
• [galaxy-dev] cufflinks libz error/warning   Ryan Golhar
• [galaxy-dev] functional and acceptance tests   Ryan Golhar
• [galaxy-dev] functional and acceptance tests   Ryan Golhar
• [galaxy-dev] Cufflinks v0.9.3 integration   Ryan Golhar
• [galaxy-dev] Alternative bowtie tools   Ryan Golhar
• [galaxy-dev] Wiki bug for updating local galaxy?   Ryan Golhar
• [galaxy-dev] Can't save BAM file from Galaxy   Ryan Golhar
• [galaxy-dev] Database cleanup and user management   Assaf Gordon
• [galaxy-dev] Database cleanup and user management   Assaf Gordon
• [galaxy-dev] Database cleanup and user management   Assaf Gordon
• [galaxy-dev] Balloon tooltips   Assaf Gordon
• [galaxy-dev] Alternative bowtie tools   Assaf Gordon
• [galaxy-dev] Alternative bowtie tools   Assaf Gordon
• [galaxy-dev] Alternative bowtie tools   Assaf Gordon
• [galaxy-dev] Alternative bowtie tools   Assaf Gordon
• [galaxy-dev] Alternative bowtie tools   Assaf Gordon
• [galaxy-dev] Alternative Bowtie/TopHat tools   Assaf Gordon
• [galaxy-dev] DB access and password field in galaxy   Gordon, Assaf
• [galaxy-dev] Fresh galaxy installation tips/requests   Assaf Gordon
• [galaxy-dev] Can't save BAM file from Galaxy   Assaf Gordon
• [galaxy-dev] Bitten by a Cheetah (long)   Assaf Gordon
• [galaxy-dev] Map with Bowtie for Illumina - multiple input fastqs   Nicki Gray
• [galaxy-dev] plotting/statistics tools suggestion   Marshall Hampton
• [galaxy-dev] divide fq into 2   Musa A. Hassan
• [galaxy-dev] divide fq into 2   Musa A. Hassan
• [galaxy-dev] MySQL 2 Postgres   Leandro Hermida
• [galaxy-dev] Referencing data library directly from tool's input parameter dropdown.   Hans-Rudolf Hotz
• [galaxy-dev] username or email address from tool   Hans-Rudolf Hotz
• [galaxy-dev] Missing Page Editor Components   Charlis Hsia
• [galaxy-dev] [galaxy-user] Around Pittsburgh on April 6? Attend the Intro to Galaxy Sessions @ Pitt   Iyer, Lakshmanan "Lax" K
• [galaxy-dev] requested number of bytes is more than a Python string can hold   Jennifer Jackson
• [galaxy-dev] requested number of bytes is more than a Python string can hold   Jennifer Jackson
• [galaxy-dev] phastCons and phastOdds scores   Jennifer Jackson
• [galaxy-dev] SAM tools SAM to BAM   Jennifer Jackson
• [galaxy-dev] fastq filetypes   Jennifer Jackson
• [galaxy-dev] mosaik   Jennifer Jackson
• [galaxy-dev] export to local file system   Jennifer Jackson
• [galaxy-dev] getting genome coordinates   Jennifer Jackson
• [galaxy-dev] Support for subdirs in dataset extra_files_path   Jim Johnson
• [galaxy-dev] importing into history from library   Jim Johnson
• [galaxy-dev] galaxy python crash with segfault in csamtools.so when using tracks   Jim Johnson
• [galaxy-dev] inputs sanitization...   Kostas Karasavvas
• [galaxy-dev] workflow representation and execution...   Kostas Karasavvas
• [galaxy-dev] workflow representation and execution...   Kostas Karasavvas
• [galaxy-dev] workflow representation and execution...   Kostas Karasavvas
• [galaxy-dev] workflow representation and execution...   Kostas Karasavvas
• [galaxy-dev] Alternative to the conditional tag, if-else in XML file?   Kempenaar, M (med)
• [galaxy-dev] Can't save BAM file from Galaxy   Liisa Koski
• [galaxy-dev] Can't save BAM file from Galaxy   Liisa Koski
• [galaxy-dev] missing setup.sh in galaxy source code   Greg Von Kuster
• [galaxy-dev] Fwd: Galaxy process   Greg Von Kuster
• [galaxy-dev] Fwd: Galaxy process   Greg Von Kuster
• [galaxy-dev] Fwd: Galaxy process   Greg Von Kuster
• [galaxy-dev] Creating Roles and groups   Greg Von Kuster
• [galaxy-dev] NoneType dereference on the jobs view   Greg Von Kuster
• [galaxy-dev] inputs sanitization...   Greg Von Kuster
• [galaxy-dev] Upload files from filesystem paths - backwards checkboxes   Greg Von Kuster
• [galaxy-dev] Upload files from filesystem paths - backwards checkboxes   Greg Von Kuster
• [galaxy-dev] Database cleanup and user management   Greg Von Kuster
• [galaxy-dev] Database cleanup and user management   Greg Von Kuster
• [galaxy-dev] Database cleanup and user management   Greg Von Kuster
• [galaxy-dev] Database cleanup and user management   Greg Von Kuster
• [galaxy-dev] Error importing BAM file into Library   Greg Von Kuster
• [galaxy-dev] purge and delete data   Greg Von Kuster
• [galaxy-dev] functional and acceptance tests   Greg Von Kuster
• [galaxy-dev] Error importing BAM file into Library   Greg Von Kuster
• [galaxy-dev] Sequencer Configuration   Greg Von Kuster
• [galaxy-dev] about bx-python and bigwig   Kanwei Li
• [galaxy-dev] Metadata recursion error with empty tabular file (with patch)   Kanwei Li
• [galaxy-dev] History information popup broken on library entries?   Kanwei Li
• [galaxy-dev] galaxy python crash with segfault in csamtools.so when using tracks   Kanwei Li
• [galaxy-dev] export to local file system   James Lindsay
• [galaxy-dev] python job manager   James Lindsay
• [galaxy-dev] missing setup.sh in galaxy source code   Zhi-Wei Lu
• [galaxy-dev] missing setup.sh in galaxy source code   Zhi-Wei Lu
• [galaxy-dev] Inquiring   Yan Luo
• [galaxy-dev] [galaxy-user] Around Pittsburgh on April 6? Attend the Intro to Galaxy Sessions @ Pitt   David Matthews
• [galaxy-dev] RPM repository for NGS tools in Galaxy   Leon Mei
• [galaxy-dev] Problem with "Map with Bowtie for Illumina" on a local Galaxy   Leon Mei
• [galaxy-dev] Galaxy and PBS Pro   Susan J. Miller
• [galaxy-dev] Popup menu population bug for data_column parameters   Pieter Neerincx
• [galaxy-dev] [galaxy-bugs] TF binding site database   Anton Nekrutenko
• [galaxy-dev] setup.sh missing   Curt Palm
• [galaxy-dev] Galaxy prone to XSS and HTML injection attacks   Paul, Rohit (NIH/NCI) [C]
• [galaxy-dev] Email notification - is workflow is the only way?   Paul, Rohit (NIH/NCI) [C]
• [galaxy-dev] extra hack to get own database connection to work?   Perdacher,Martin
• [galaxy-dev] galaxy-cloud display data in browser broken   Isabelle Phan
• [galaxy-dev] galaxy-cloud display data in browser broken   Isabelle Phan
• [galaxy-dev] Server error from history view   Isabelle Phan
• [galaxy-dev] testing updates on Galaxy CloudMan   Isabelle Phan
• [galaxy-dev] testing updates on Galaxy CloudMan   Isabelle Phan
• [galaxy-dev] Display of tabular data in Galaxy   Leighton Pritchard
• [galaxy-dev] Referencing data library directly from tool's input parameter dropdown.   Rodriguez, Aaron (NIH/NCI) [C]
• [galaxy-dev] Referencing data library directly from tool's input parameter dropdown.   Rodriguez, Aaron (NIH/NCI) [C]
• [galaxy-dev] Error when trying to import word document into galaxy   Victor Ruotti
• [galaxy-dev] [galaxy-user] Around Pittsburgh on April 6? Attend the Intro to Galaxy Sessions @ Pitt   Saha, Rinku
• [galaxy-dev] Upload fails, webapp and job runner running on different machines   Louise-Amélie Schmitt
• [galaxy-dev] new_file_path vs $TMP   Louise-Amélie Schmitt
• [galaxy-dev] Database cleanup and user management   Sebastian J. Schultheiss
• [galaxy-dev] Database cleanup and user management   Sebastian J. Schultheiss
• [galaxy-dev] Database cleanup and user management   Sebastian J. Schultheiss
• [galaxy-dev] Database cleanup and user management   Sebastian J. Schultheiss
• [galaxy-dev] Login problem.   CHAN Chee Seng
• [galaxy-dev] Login problem.   CHAN Chee Seng
• [galaxy-dev] [galaxy-user] postgres version 9.0.3   Martin Senger
• [galaxy-dev] purge and delete data   Nicolas Servant
• [galaxy-dev] RPM repository for NGS tools in Galaxy   James Taylor
• [galaxy-dev] [Nbicgalaxy-admin] RPM repository for NGS tools in Galaxy   James Taylor
• [galaxy-dev] about bx-python and bigwig   James Taylor
• [galaxy-dev] Restricted user builds   James Taylor
• [galaxy-dev] Alternative bowtie tools   James Taylor
• [galaxy-dev] Map with Bowtie for Illumina - multiple input fastqs   Kelly Vincent
• [galaxy-dev] Galaxy Local Installation Issue   Kelly Vincent
• [galaxy-dev] Galaxy process   SHAUN WEBB
• [galaxy-dev] Info button   SHAUN WEBB
• [galaxy-dev] Fwd: Galaxy process   SHAUN WEBB
• [galaxy-dev] Fwd: Galaxy process   SHAUN WEBB
• [galaxy-dev] MySQL 2 Postgres   SHAUN WEBB
• [galaxy-dev] Galaxy workflow with variable inputs   Dave Walton
• [galaxy-dev] Galaxy workflow with variable inputs   Dave Walton
• [galaxy-dev] Running a workflow programatically   Dave Walton
• [galaxy-dev] upload large data file   Yanji Xu
• [galaxy-dev] parallel computing   Yanji Xu
• [galaxy-dev] Login problem.   Luobin Yang
• [galaxy-dev] Login problem.   Luobin Yang
• [galaxy-dev] Login problem.   Luobin Yang
• [galaxy-dev] Using Cytoscape web start as External Data Visualization   charlie
• [galaxy-dev] Galaxy Local Installation Issue   blake haas
• [galaxy-dev] getting genome coordinates   shamsher jagat
• [galaxy-dev] cufflinks libz error/warning   vasu punj
• [galaxy-dev] galaxy related   shashi shekhar

Last message date: Thu Mar 31 17:36:46 EDT 2011
Archived on: Fri Apr 1 10:41:11 EDT 2011

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