[galaxy-dev] CSV import of Sample information Error

[Joe Cruz]

Hello Everyone,

I wanted to ask if anyone has experience successfully importing sample
information through a csv file.

I know there is an issue already created for csv file import, which I left a
comment earlier:

https://bitbucket.org/galaxy/galaxy-central/issue/398/csv-import-of-sample-information-is-broken#comment-510683
\

but my bug doesn't seem to deal with an 'Invalid Request ID' as the issue
above states.

This is the error I get:

URL:
http://localhost/requests_common/add_samples?cntrller=requests&id=a65cf3ca8eb85be3
File
'/home/galaxy1/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/exceptions/errormiddleware.py',
line 143 in __call__
  app_iter = self.application(environ, start_response)
File
'/home/galaxy1/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/debug/prints.py',
line 98 in __call__
  environ, self.app)
File '/home/galaxy1/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/wsgilib.py',
line 539 in intercept_output
  app_iter = application(environ, replacement_start_response)
File
'/home/galaxy1/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/recursive.py',
line 80 in __call__
  return self.application(environ, start_response)
File
'/home/galaxy1/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/httpexceptions.py',
line 632 in __call__
  return self.application(environ, start_response)
File '/home/galaxy1/galaxy-dist/lib/galaxy/web/framework/base.py', line 145
in __call__
  body = method( trans, **kwargs )
File '/home/galaxy1/galaxy-dist/lib/galaxy/web/framework/__init__.py', line
84 in decorator
  return func( self, trans, *args, **kwargs )
File
'/home/galaxy1/galaxy-dist/lib/galaxy/web/controllers/requests_common.py',
line 829 in add_samples
  return self.__import_samples( trans, cntrller, request,
displayable_sample_widgets, libraries, **kwd )
File
'/home/galaxy1/galaxy-dist/lib/galaxy/web/controllers/requests_common.py',
line 1109 in __import_samples
  sample_copy_select_field=sample_copy_select_field )
File '/home/galaxy1/galaxy-dist/lib/galaxy/web/framework/__init__.py', line
650 in fill_template
  return self.fill_template_mako( filename, **kwargs )
File '/home/galaxy1/galaxy-dist/lib/galaxy/web/framework/__init__.py', line
661 in fill_template_mako
  return template.render( **data )
File '/home/galaxy1/galaxy-dist/eggs/Mako-0.2.5-py2.6.egg/mako/template.py',
line 133 in render
  return runtime._render(self, self.callable_, args, data)
File '/home/galaxy1/galaxy-dist/eggs/Mako-0.2.5-py2.6.egg/mako/runtime.py',
line 364 in _render
  _render_context(template, callable_, context, *args,
**_kwargs_for_callable(callable_, data))
File '/home/galaxy1/galaxy-dist/eggs/Mako-0.2.5-py2.6.egg/mako/runtime.py',
line 381 in _render_context
  _exec_template(inherit, lclcontext, args=args, kwargs=kwargs)
File '/home/galaxy1/galaxy-dist/eggs/Mako-0.2.5-py2.6.egg/mako/runtime.py',
line 414 in _exec_template
  callable_(context, *args, **kwargs)
File '/home/galaxy1/galaxy-dist/database/compiled_templates/base.mako.py',
line 40 in render_body
  __M_writer(unicode(next.body()))
File '/home/galaxy1/galaxy-dist/eggs/Mako-0.2.5-py2.6.egg/mako/runtime.py',
line 255 in <lambda>
  return lambda *args, **kwargs:callable_(self.context, *args, **kwargs)
File '/home/galaxy1/galaxy-dist/database/compiled_templates/requests/common/
add_samples.mako.py', line 164 in render_body
  __M_writer(unicode(render_samples_grid( cntrller, request,
displayable_sample_widgets, action='edit_samples', adding_new_samples=True,
encoded_selected_sample_ids=[], render_buttons=False,
grid_header=grid_header )))
File '/home/galaxy1/galaxy-dist/eggs/Mako-0.2.5-py2.6.egg/mako/runtime.py',
line 255 in <lambda>
  return lambda *args, **kwargs:callable_(self.context, *args, **kwargs)
File '/home/galaxy1/galaxy-dist/database/compiled_templates/requests/common/
common.mako.py', line 749 in render_render_samples_grid
  sample_widget_history = sample_widget[ 'history' ]
KeyError: 'history'

I greatly appreciate your help and patience.

Thanks,

joe
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