December 2011 Archives by date

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Starting: Thu Dec 1 00:20:39 EST 2011
Ending: Sat Dec 31 19:58:07 EST 2011
Messages: 254

• [galaxy-dev] Removing nodes from a CloudMan instance   Clare Sloggett
• [galaxy-dev] [galaxy-user] Using Galaxy Cloudman for a workshop   Clare Sloggett
• [galaxy-dev] [galaxy-user] Using Galaxy Cloudman for a workshop   Enis Afgan
• [galaxy-dev] Removing nodes from a CloudMan instance   Enis Afgan
• [galaxy-dev] GalaxyCloudman + CADDSuite   Enis Afgan
• [galaxy-dev] synchronous data depositing   James Ireland
• [galaxy-dev] GalaxyCloudman + CADDSuite   Marcel Schumann
• [galaxy-dev] [galaxy-user] Using Galaxy Cloudman for a workshop   Clare Sloggett
• [galaxy-dev] GalaxyCloudman + CADDSuite   Enis Afgan
• [galaxy-dev] Quota will not decrease with permanent delete   Glen Beane
• [galaxy-dev] synchronous data depositing   Daniel Blankenberg
• [galaxy-dev] GATK / R local install configuration   Carlos Borroto
• [galaxy-dev] Local installation of the tool shed   Greg Von Kuster
• [galaxy-dev] synchronous data depositing   James Ireland
• [galaxy-dev] synchronous data depositing   Daniel Blankenberg
• [galaxy-dev] synchronous data depositing   James Ireland
• [galaxy-dev] synchronous data depositing   James Ireland
• [galaxy-dev] synchronous data depositing   Daniel Blankenberg
• [galaxy-dev] Job output not returned from cluster   Nate Coraor
• [galaxy-dev] proxy settings?   Nate Coraor
• [galaxy-dev] synchronous data depositing   James Ireland
• [galaxy-dev] dadaset (file) visualization   Alfonso Núñez Salgado
• [galaxy-dev] synchronous data depositing   James Ireland
• [galaxy-dev] GalaxyCloudman + CADDSuite   Brad Chapman
• [galaxy-dev] GalaxyCloudman + CADDSuite   Marcel Schumann
• [galaxy-dev] lims integration   Craig Blackhart
• [galaxy-dev] lims integration   Edward Kirton
• [galaxy-dev] Job output not returned from cluster   Edward Kirton
• [galaxy-dev] PATH env variable for SGE jobs   Langhorst, Brad
• [galaxy-dev] lims integration   Dannon Baker
• [galaxy-dev] GalaxyCloudman + CADDSuite   Enis Afgan
• [galaxy-dev] PATH env variable for SGE jobs   Nate Coraor
• [galaxy-dev] Galaxy-Announce: A new, moderated, low-volume Galaxy Mailing List   Dave Clements
• [galaxy-dev] PATH env variable for SGE jobs   Chorny, Ilya
• [galaxy-dev] Define a path for the command files   Toqa Manasrah
• [galaxy-dev] Define a path for the command files   Toqa Manasrah
• [galaxy-dev] Configure Tools/Blast   Zachary Charlop-Powers
• [galaxy-dev] proxy settings?   Smithies, Russell
• [galaxy-dev] PATH env variable for SGE jobs   Smithies, Russell
• [galaxy-dev] [galaxy-user] Upload executable in galaxy   Giota Kottara
• [galaxy-dev] possibly weird config requests...   Smithies, Russell
• [galaxy-dev] possibly weird config requests...   Ross
• [galaxy-dev] Removing nodes from a CloudMan instance   Clare Sloggett
• [galaxy-dev] Configure Tools/Blast   Bossers, Alex
• [galaxy-dev] Variable multiple output files not appearing in history   graham etherington (TSL)
• [galaxy-dev] Variable multiple output files not appearing in history   Geert Werk
• [galaxy-dev] Variable multiple output files not appearing in history   Dannon Baker
• [galaxy-dev] Urgent help needed   Toqa Manasrah
• [galaxy-dev] Urgent help needed   Dannon Baker
• [galaxy-dev] [galaxy-user] Upload executable in galaxy   Nate Coraor
• [galaxy-dev] possibly weird config requests...   Nate Coraor
• [galaxy-dev] GATK / R local install configuration   Daniel Blankenberg
• [galaxy-dev] DB schema upgrade problem (79 -> 85)   Leon Mei
• [galaxy-dev] DB schema upgrade problem (79 -> 85)   Nate Coraor
• [galaxy-dev] DB schema upgrade problem (79 -> 85)   Leon Mei
• [galaxy-dev] Urgent help needed   Toqa Manasrah
• [galaxy-dev] Display VCF in IGV problem   Lance Parsons
• [galaxy-dev] [galaxy-bugs] Problem with indexing a genome through tophat on a local copy of Galaxy...   Jeremy Goecks
• [galaxy-dev] possibly weird config requests...   Smithies, Russell
• [galaxy-dev] Workflow API (runtime modification of tool parameters)   Richard Park
• [galaxy-dev] Workflow API (runtime modification of tool parameters)   Dannon Baker
• [galaxy-dev] [galaxy-bugs] Problem with indexing a genome through tophat on a local copy of Galaxy...   David Matthews
• [galaxy-dev] [galaxy-bugs] Problem with indexing a genome through tophat on a local copy of Galaxy...   David Matthews
• [galaxy-dev] Variable multiple output files not appearing in history   graham etherington (TSL)
• [galaxy-dev] DB schema upgrade problem (79 -> 85)   Leon Mei
• [galaxy-dev] Can't view data files from published histories, only imported histories   Liisa Koski
• [galaxy-dev] [galaxy-bugs] Problem with indexing a genome through tophat on a local copy of Galaxy...   Jeremy Goecks
• [galaxy-dev] DB schema upgrade problem (79 -> 85)   Nate Coraor
• [galaxy-dev] About database indexes   Louise-Amélie Schmitt
• [galaxy-dev] Urgent help needed   Dannon Baker
• [galaxy-dev] [Internal - Galaxy-dev #2159] (New) 2 questions about Galaxy's functional testing support   Nate Coraor
• [galaxy-dev] Quota will not decrease with permanent delete   Nate Coraor
• [galaxy-dev] Quota will not decrease with permanent delete   Nate Coraor
• [galaxy-dev] [Internal - Galaxy-dev #2159] (New) 2 questions about Galaxy's functional testing support   Paniagua, Eric
• [galaxy-dev] About database indexes   Nate Coraor
• [galaxy-dev] Tool creation: how to restrict input dataset selector to appropriate file types?   Louise-Amélie Schmitt
• [galaxy-dev] Tool creation: how to restrict input dataset selector to appropriate file types?   Dannon Baker
• [galaxy-dev] Tool creation: how to restrict input dataset selector to appropriate file types?   Louise-Amélie Schmitt
• [galaxy-dev] Configuring Toolsheds   Zachary Charlop-Powers
• [galaxy-dev] Configuring Toolsheds   Greg Von Kuster
• [galaxy-dev] SICER bug in Workflow   Daniel Blankenberg
• [galaxy-dev] Send data to Galaxy from external websites.   Vishal R Patel
• [galaxy-dev] Cloudman and parameterized launching   Scott Cain
• [galaxy-dev] Workflow API (runtime modification of tool parameters)   Richard Park
• [galaxy-dev] FTP GALAXY   James Boocock
• [galaxy-dev] Excel upload problems   Siemen Sikkema
• [galaxy-dev] bwa setting metadata   SHAUN WEBB
• [galaxy-dev] Toolshed fasta-section down?   Bossers, Alex
• [galaxy-dev] Workflow API (runtime modification of tool parameters)   Dannon Baker
• [galaxy-dev] Configuring Toolsheds   Greg Von Kuster
• [galaxy-dev] FTP GALAXY   Nate Coraor
• [galaxy-dev] Excel upload problems   Greg Von Kuster
• [galaxy-dev] Excel upload problems   Joe Cruz
• [galaxy-dev] Excel upload problems   Peter Cock
• [galaxy-dev] Excel upload problems   Ross
• [galaxy-dev] January 2012 Galaxy Events: Dec 15 Deadline for Czech Republic Workshop   Dave Clements
• [galaxy-dev] Excel upload problems   Peter Cock
• [galaxy-dev] Cloudman and parameterized launching   Brad Chapman
• [galaxy-dev] Genome indices, NFS and I/O   Louise-Amélie Schmitt
• [galaxy-dev] Dynamic Tool Parameter Lists?   John Major
• [galaxy-dev] Genome indices, NFS and I/O   Dannon Baker
• [galaxy-dev] Version String   Peter Cock
• [galaxy-dev] Error viewing BAM files in IGV   Alexander Graf
• [galaxy-dev] Variable multiple output files not appearing in history   Dannon Baker
• [galaxy-dev] Error viewing BAM files in IGV   Alexander Graf
• [galaxy-dev] How and where to install tool dependencies   Josh Nielsen
• [galaxy-dev] Divide FASTQ file into paired and unpaired reads (version 0.0.4) - naming suffix not recognized   Liisa Koski
• [galaxy-dev] Divide FASTQ file into paired and unpaired reads (version 0.0.4) - naming suffix not recognized   Peter Cock
• [galaxy-dev] Divide FASTQ file into paired and unpaired reads (version 0.0.4) - naming suffix not recognized   Liisa Koski
• [galaxy-dev] How to pass files/data invisibly between tools?   Steven Platt
• [galaxy-dev] Galaxy web interface falls over when running TopHat   David Matthews
• [galaxy-dev] Divide FASTQ file into paired and unpaired reads (version 0.0.4) - naming suffix not recognized   Peter Cock
• [galaxy-dev] Problem with uploading SMALL file to Galaxy on EC2 and get "client intended to send too large body"   Thon deBoer
• [galaxy-dev] How and where to install tool dependencies   Josh Nielsen
• [galaxy-dev] Galaxy on GPU   Isabelle Phan
• [galaxy-dev] how to disable error detection   Xuebing Wu
• [galaxy-dev] Galaxy web interface falls over when running TopHat   Jeremy Goecks
• [galaxy-dev] How and where to install tool dependencies   Jeremy Goecks
• [galaxy-dev] Divide FASTQ file into paired and unpaired reads (version 0.0.4) - naming suffix not recognized   Peter Cock
• [galaxy-dev] Galaxy web interface falls over when running TopHat   David Matthews
• [galaxy-dev] googlebot   SHAUN WEBB
• [galaxy-dev] Error viewing BAM files in IGV   Nate Coraor
• [galaxy-dev] How to pass files/data invisibly between tools?   Nate Coraor
• [galaxy-dev] How and where to install tool dependencies   Josh Nielsen
• [galaxy-dev] Dynamic Tool Parameter Lists?   Hans-Rudolf Hotz
• [galaxy-dev] Divide FASTQ file into paired and unpaired reads (version 0.0.4) - naming suffix not recognized   Liisa Koski
• [galaxy-dev] Galaxy on GPU   Nate Coraor
• [galaxy-dev] Moving Galaxy's installed folder   Peter Cock
• [galaxy-dev] How and where to install tool dependencies   Nate Coraor
• [galaxy-dev] How and where to install tool dependencies   Josh Nielsen
• [galaxy-dev] Tools accessing web services   Daniel Blankenberg
• [galaxy-dev] googlebot   Redmond, James
• [galaxy-dev] Galaxy web interface falls over when running TopHat   Nate Coraor
• [galaxy-dev] error when running UNIT_TEST script   James Boocock
• [galaxy-dev] administrator Interface.   James Boocock
• [galaxy-dev] Galaxy web interface falls over when running TopHat   David Matthews
• [galaxy-dev] googlebot   SHAUN WEBB
• [galaxy-dev] administrator Interface.   Daniel Blankenberg
• [galaxy-dev] googlebot   Dannon Baker
• [galaxy-dev] Galaxy web interface falls over when running TopHat   David Matthews
• [galaxy-dev] Question about the <repeat> tag   Roger Ngo
• [galaxy-dev] Question about the <repeat> tag   Dannon Baker
• [galaxy-dev] [galaxy-user] enabling regular users to upload large data volumes to a local Galaxy server   Shantanu Pavgi
• [galaxy-dev] Question about the <repeat> tag   Roger Ngo
• [galaxy-dev] about ftp setting up   Liao_Ruiqi
• [galaxy-dev] abolut ftp setup   Richard Liao
• [galaxy-dev] New tool not recognised unless i reboot   Makis Ladoukakis
• [galaxy-dev] error when running UNIT_TEST script   Paniagua, Eric
• [galaxy-dev] New tool not recognised unless i reboot   Peter Cock
• [galaxy-dev] Job runner out of memory problem   Oleksandr Moskalenko
• [galaxy-dev] concurrent job run parameter problem   Oleksandr Moskalenko
• [galaxy-dev] Looking for Galaxy related papers (or have written one)? There is a new Galaxy Group @ CiteULike   Dave Clements
• [galaxy-dev] New tool not recognised unless i reboot   Makis Ladoukakis
• [galaxy-dev] Fwd: Galaxy issues   David Matthews
• [galaxy-dev] New tool not recognised unless i reboot   Daniel Blankenberg
• [galaxy-dev] Executing a binary file from Galaxy job   Roger Ngo
• [galaxy-dev] Excel upload problems   Siemen Henk Sikkema
• [galaxy-dev] Excel upload problems   Peter Cock
• [galaxy-dev] Data upload from a server   Makis Ladoukakis
• [galaxy-dev] Data upload from a server   Makis Ladoukakis
• [galaxy-dev] Automatic citation list from a tool, workflow, or history   Peter Cock
• [galaxy-dev] Automatic citation list from a tool, workflow, or history   Sean Davis
• [galaxy-dev] Moving Galaxy's installed folder   Peter Cock
• [galaxy-dev] Excel upload problems   Greg Von Kuster
• [galaxy-dev] Data upload from a server   Greg Von Kuster
• [galaxy-dev] Excel upload problems   Peter Cock
• [galaxy-dev] Excel upload problems   Greg Von Kuster
• [galaxy-dev] Automatic citation list from a tool, workflow, or history   Paul Gordon
• [galaxy-dev] Automatic citation list from a tool, workflow, or history   Peter Cock
• [galaxy-dev] [galaxy-user] about ftp setting up   Luciano Cosme
• [galaxy-dev] Automatic citation list from a tool, workflow, or history   Casey Bergman
• [galaxy-dev] Automatic citation list from a tool, workflow, or history   Bossers, Alex
• [galaxy-dev] file upload issue   weihong yan
• [galaxy-dev] file upload issue   Luciano Cosme
• [galaxy-dev] file upload issue   weihong yan
• [galaxy-dev] Visualization/Display Application with related datasets   Andrew Brock
• [galaxy-dev] uname: write error: Broken pipe   Peter Cock
• [galaxy-dev] Can not clean my galaxy datasets   Jennifer Jackson
• [galaxy-dev] [galaxy-user] Help need in troubleshooting cufflinks   Carlos Borroto
• [galaxy-dev] Galaxy issues   Nate Coraor
• [galaxy-dev] abolut ftp setup   Nate Coraor
• [galaxy-dev] Job runner out of memory problem   Nate Coraor
• [galaxy-dev] concurrent job run parameter problem   Nate Coraor
• [galaxy-dev] Error viewing BAM files in IGV   Nate Coraor
• [galaxy-dev] Executing a binary file from Galaxy job   Nate Coraor
• [galaxy-dev] Can not clean my galaxy datasets   Hans-Rudolf Hotz
• [galaxy-dev] Error viewing BAM files in IGV   Jim Johnson
• [galaxy-dev] Hidden history item   Jeremy Goecks
• [galaxy-dev] Galaxy with PBS runner Setting   Le-Shin Wu
• [galaxy-dev] Galaxy with PBS runner Setting   Nate Coraor
• [galaxy-dev] Hidden history item   Bossers, Alex
• [galaxy-dev] Galaxy with PBS runner Setting   Nate Coraor
• [galaxy-dev] [query] contribute a data library for standard inclusion in the public Galaxy?   William Ray
• [galaxy-dev] Galaxy issues   David Matthews
• [galaxy-dev] Best practices with data on clusters   Cittaro Davide
• [galaxy-dev] Post...   Saadeh, Heba
• [galaxy-dev] Problem uploading file by an URL   Marc Bras
• [galaxy-dev] embedded code into Pages   remy d1
• [galaxy-dev] problems previewing certain files, downloading files and with login   Alfonso Núñez Salgado
• [galaxy-dev] Galaxy Server on Bio-Linux   Bicak, Mesude
• [galaxy-dev] embedded code into Pages   Jeremy Goecks
• [galaxy-dev] Search the Galaxy!   Dave Clements
• [galaxy-dev] Galaxy Wiki   John Major
• [galaxy-dev] Problem uploading files from filesystem paths   Liisa Koski
• [galaxy-dev] unpacking zip files during upload   Langhorst, Brad
• [galaxy-dev] Can not clean my galaxy datasets   liram_vardi at agilent.com
• [galaxy-dev] Problem uploading files from filesystem paths   Makis Ladoukakis
• [galaxy-dev] Zip file problems + RE: Excel upload problems   Lukasse, Pieter
• [galaxy-dev] running two Galaxy installations on one server - was: Re: Can not clean my galaxy datasets   Hans-Rudolf Hotz
• [galaxy-dev] Exiting a java application without errors   graham etherington (TSL)
• [galaxy-dev] manage_db.sh upgrade fails after fresh install of Galaxy   Iry Witham
• [galaxy-dev] Exiting a java application without errors   Mikel Egaña Aranguren
• [galaxy-dev] running two Galaxy installations on one server - was: Re: Can not clean my galaxy datasets   liram_vardi at agilent.com
• [galaxy-dev] running two Galaxy installations on one server - was: Re: Can not clean my galaxy datasets   Hans-Rudolf Hotz
• [galaxy-dev] running two Galaxy installations on one server - was: Re: Can not clean my galaxy datasets   liram_vardi at agilent.com
• [galaxy-dev] Itinerary for 10/24 UVa visit   Greg Von Kuster
• [galaxy-dev] Exiting a java application without errors   Fields, Christopher J
• [galaxy-dev] running two Galaxy installations on one server - was: Re: Can not clean my galaxy datasets   Fields, Christopher J
• [galaxy-dev] running two Galaxy installations on one server - was: Re: Can not clean my galaxy datasets   liram_vardi at agilent.com
• [galaxy-dev] running two Galaxy installations on one server - was: Re: Can not clean my galaxy datasets   Hans-Rudolf Hotz
• [galaxy-dev] running two Galaxy installations on one server - was: Re: Can not clean my galaxy datasets   amir_ben-dor at agilent.com
• [galaxy-dev] Stuck at "Job is waiting to run" when using "Get data"   Liang Zhang
• [galaxy-dev] Written tutorial   Rosenfeld, Jeffrey
• [galaxy-dev] running two Galaxy installations on one server - was: Re: Can not clean my galaxy datasets   Chris Fields
• [galaxy-dev] running two Galaxy installations on one server - was: Re: Can not clean my galaxy datasets   Chris Fields
• [galaxy-dev] jquery / js / python programming for galaxy / bugs, ideally for AWS ec2   carl crott
• [galaxy-dev] Log file for trans.log_event   Alfonso Núñez Salgado
• [galaxy-dev] Log file for trans.log_event   Greg Von Kuster
• [galaxy-dev] Newbie question for toolshed development   Greg Von Kuster
• [galaxy-dev] Toolshed   Ted Goldstein
• [galaxy-dev] defining genome assembler in galaxy   Bassam Tork
• [galaxy-dev] Log file for trans.log_event   Alfonso Núñez Salgado
• [galaxy-dev] Possible bug   Alfonso Núñez Salgado
• [galaxy-dev] Log file for trans.log_event   Greg Von Kuster
• [galaxy-dev] Toolshed   Greg Von Kuster
• [galaxy-dev] Log file for trans.log_event   Alfonso Núñez Salgado
• [galaxy-dev] Problems with DataImport   Ted Goldstein
• [galaxy-dev] defining genome assembler in galaxy   Jeremy Goecks
• [galaxy-dev] Written tutorial   Jeremy Goecks
• [galaxy-dev] Toolshed   Greg Von Kuster
• [galaxy-dev] defining genome assembler in galaxy   Bassam Tork
• [galaxy-dev] Written tutorial   Jeremy Goecks
• [galaxy-dev] defining genome assembler in galaxy   Jeremy Goecks
• [galaxy-dev] amplicon reads(with errors)   Bassam Tork
• [galaxy-dev] Existing efforts to convert the QIIME pipeline to Galaxy?   Jim Johnson
• [galaxy-dev] Torque / scrambling pbs_python   Ryan Golhar
• [galaxy-dev] amplicon reads(with errors)   Florent Angly
• [galaxy-dev] Zip file problems + RE: Excel upload problems   Lukasse, Pieter
• [galaxy-dev] Is there a way to pass key =value pairs to the output files in a programmatic way? (Tags? Metadata?)   Thon deBoer
• [galaxy-dev] Problems with DataImport (fixed)   Ted Goldstein
• [galaxy-dev] Is there a way to pass key =value pairs to the output files in a programmatic way? (Tags? Metadata?)   Thon deBoer
• [galaxy-dev] Is there a way to pass key =value pairs to the output files in a programmatic way? (Tags? Metadata?)   Peter Cock
• [galaxy-dev] Is there a way to pass key =value pairs to the output files in a programmatic way? (Tags? Metadata?)   Thon Deboer
• [galaxy-dev] Is there a way to pass key =value pairs to the output files in a programmatic way? (Tags? Metadata?)   Peter Cock

Last message date: Sat Dec 31 19:58:07 EST 2011
Archived on: Sat Dec 31 19:58:15 EST 2011

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