[galaxy-dev] [galaxy-user] Upload executable in galaxy
nate at bx.psu.edu
Mon Dec 5 14:12:50 EST 2011
The executable should be placed in a directory on $PATH. You can see what directories those are with:
% echo $PATH
You can add to $PATH with:
% export PATH="/new/dir:$PATH"
On Dec 4, 2011, at 3:55 PM, Giota Kottara wrote:
> I've put the executable in the directory where the xml file and wrapper is. The message I'm getting when I run the tool is Unable to run tool: No such file or directory.
> I guess that I'm forgetting something....
> > Subject: Re: [galaxy-user] Upload executable in galaxy
> > From: nate at bx.psu.edu
> > Date: Mon, 28 Nov 2011 13:40:24 -0500
> > CC: galaxy-dev at bx.psu.edu
> > To: giota_kottara at hotmail.com
> > On Nov 23, 2011, at 11:10 AM, Giota Kottara wrote:
> > > Dear galaxy developers,
> > >
> > > I am trying to integrate an executable tool in a private instance of galaxy. I stored the configuration .xml file and the executable in tools folder of Galaxy and the tool appears in the homepage. Nevertheless when i am running the tool it doesn't seem to find the executable. Am I forgetting something?
> > Hi Giota,
> > I've moved this over to the galaxy-dev list since it pertains to tool development.
> > Executables will need to be on the $PATH of the user running Galaxy. Could you share the error messages you receive when you run the tool?
> > --nate
> > >
> > > Thank you in advance
> > > Giota Kottara
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