[galaxy-dev] dadaset (file) visualization

Alfonso Núñez Salgado anunez at cbm.uam.es
Thu Dec 1 13:29:52 EST 2011


Hi,

     I'm new in galaxy, but i've made several installations in different 
distributions. At his moment I'm using RHEL 6.1 and I'm not able to 
visualize certain files. After uploading a SAM file I click on the file 
title and a preview of few lines appears whith the rest of the available 
options. When i click on  the "eye" button nothing happen. If i try to 
download it, i do receive an empty file.

This behaviour occurs with other file extension (BAM, HTML), but not 
whith others (FASTA, FASTAq)

Using wget:

wget 
"http://10.0.0.2:8090/galaxy/datasets/5969b1f7201f12ae/display/?preview=True"
--2011-12-01 18:18:56--  
http://10.0.0.2:8090/galaxy/datasets/5969b1f7201f12ae/display/?preview=True
Connecting to 10.0.0.2:8090... connected.
HTTP request sent, awaiting response... 10.0.0.2 - - 
[01/Dec/2011:18:18:56 +0000] "GET 
/galaxy/datasets/5969b1f7201f12ae/display/?preview=True HTTP/1.0" 200 - 
"-" "Wget/1.12 (linux-gnu)"
200 OK
Length: unspecified [text/plain]
Saving to: `index.html?preview=True.3'

finaly index.html?preview=True.3 is an empty file, and obviously, no 
errors is displayed with any of the debugging options.
I've done the same tests in other distributions and apparently every 
thing seems right

Can any one of you get some light to this unexplainable black hole?

-- 
=====================================
Alfonso Núñez Salgado
Unidad de Bioinformática
Centro de Biologia Molecular Severo Ochoa
C/Nicolás Cabrera 1
Universidad Autónoma de Madrid
Cantoblanco, 28049 Madrid (Spain)
Phone: (34) 91-196-4633
Fax:   (34) 91-196-4420
web: http://ub.cbm.uam.es/
=====================================



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