[galaxy-dev] Metadata error

[Nate Coraor]

Chorny, Ilya wrote:
> I get these two error in the log file. The job finishes correctly and a metadata file is created but I still get the error. Can anyone provide me with more detail about what this error means? The second error is incorrect because the files were deleted.
> 
> 
> setting metadata externally failed for HistoryDatasetAssociation 344: [Errno 1] Operation not permitted: '/mnt/data/galaxy/database/files/000'
> and
> 
> Failed to cleanup MetadataTempFile temp files from ../../mnt/data/galaxy/database/tmp/metadata_out_HistoryDatasetAssociation_344_NUDu3A: No JSON object could be decoded: line 1 column 0 (char 0)

Hi Ilya,

The problem is somewhere in scripts/set_metadata.py.  If you 'raise' the
exception on line 84 of this script rather than writing it to the
metadata results file, you should see a full traceback that reveals the
source of the error.

--nate

> 
> 
> Ilya Chorny Ph.D.
> Bioinformatics Scientist I
> Illumina, Inc.
> 9885 Towne Centre Drive
> San Diego, CA 92121
> Work: 858.202.4582
> Email: ichorny at illumina.com<mailto:ichorny at illumina.com>
> Website: www.illumina.com<http://www.illumina.com>
> 
> 

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