[galaxy-dev] Sam2interval.py bug

[Kanwei Li]

Hi Shaun,

Thanks for reporting this, I have just committed the fix. I will let you
know if we add the read_name to the truncated output.

-K

On Tue, Aug 2, 2011 at 6:54 AM, SHAUN WEBB <swebb1 at staffmail.ed.ac.uk>wrote:

>
> Hi, I've noticed a bug in sam2interval.py.
>
> There are a few indentation errors in the final lines of code. I think
> there should be an indent after:
>
>            if not ref_name == '*':
>
> And this whole if statement should be included in the for loop above.
>
>
> Also, would you be able to add read_name to the truncated output (when not
> printing all fields). This makes downstream analysis a lot easier, e.g.
> looking at reads that map multiple times.
>
> Thanks
> Shaun Webb
>
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