[galaxy-dev] Picard installation problem

colin molter colin.molter at gmail.com
Sun Aug 14 08:23:24 EDT 2011


If i type python in a terminal, it says that it uses the version 2.6.7.
And it succeed in creating a class Test().

is it possible that my galaxy distribution is using an older version? is
there a way to check what python version does galaxy use?

thanks
colin

2011/8/14 Brad Chapman <chapmanb at 50mail.com>

> Colin;
>
> > Second -and still unsolved- problem: When i try to run a picard tool, I
> get
> > the following exception:
> >
> >  File "/home/hg/Galaxy/galaxy-dist/tools/picard/picard_wrapper.py", line
> 40
> >     class PicardBase():
> >                      ^
> > SyntaxError: invalid syntax
>
> What version of Python are you running? This appears to be a syntax
> error from an older version:
>
> $ python2.7
> Python 2.7.1+ (r271:86832, Apr 11 2011, 18:13:53)
> [GCC 4.5.2] on linux2
> Type "help", "copyright", "credits" or "license" for more
> information.
> >>> class Test():
> ...
>
> $ python2.4
> Python 2.4.3 (#1, Nov 11 2010, 13:30:19)
> [GCC 4.1.2 20080704 (Red Hat 4.1.2-48)] on linux2
> Type "help", "copyright", "credits" or "license" for more
> information.
> >>> class Test():
>  File "<stdin>", line 1
>      class Test():
>                 ^
> SyntaxError: invalid syntax
>
> If you're using 2.4 it's well worth upgrading to 2.6 or 2.7. Hope
> this helps,
> Brad
>
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