[galaxy-dev] [patch] unused tophat parameters

[Jeremy Goecks]

Included in galaxy-central changeset 4501:0b278c24c19f

Thanks!

On Oct 27, 2010, at 5:51 PM, Ry4an Brase wrote:

> We had a sharp-eyed researcher notice that her tophat output with
> various parameters was always yielding the same results.  JJ tracked it
> down to a bug in tophat_wrapper.py where the segment-length and
> segment-mismatches are displayed in the options and are parsed in
> ophat_wrapper.py, but those options are never added to the actual
> command line  for tophat.
> 
> Attached is a patch that wires them up.
> 
> -- 
> Ry4an Brase                                         612-626-6575
> Software Developer                                  Application Development
> University of Minnesota Supercomputing Institute    http://www.msi.umn.edu
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J.