[galaxy-dev] how to set PATH variable

[Ry4an Brase]

On Wed, Nov 03, 2010 at 05:19:03PM -0400, David Hoover wrote:
> I'm trying to enable the EMBOSS tools, and Galaxy is complaining it
> can't find the executables.  Our local installation of EMBOSS is in a
> non-standard location (/usr/local/emboss/bin).  I tried setting the
> $PATH variable in ~/.bashrc_profile and ~/.profile, but this had no
> effect.  Where can I add the path to the EMBOSS tools so that Galaxy
> can find them?

I set ours directly in run.sh.  Make sure you use 'export' so it alters
subprocesses too.

-- 
Ry4an Brase                                         612-626-6575
Software Developer                                  Application Development
University of Minnesota Supercomputing Institute    http://www.msi.umn.edu