[galaxy-dev] create multiple historie items

vill M.P.Villerius at lumc.nl
Wed Feb 17 10:08:51 EST 2010


Actually yes,

Once my per script gets executed with the wrapper script my two output
files get created in the files/000/ as dataset_424.dat_FWD.WIG.gz and 
dataset_424.dat_REV.WIG.gz
but I can't get these files into separate uniquely ID'd history items
from which I can send the files off to the UCSC browser.

code :
<command interpreter="perl">galaxy-wrapper_GAPSS_igf2wig.v2.pl $input
$SeperateStrands $CutOff $output $output_id1 $output_id2 </command>
<data name="output_id1" format="interval">
<data name="output_id2" format="interval">

I must be doing something wrong within the xml file but I don't know
what?

//Michel


On Wed, 2010-02-17 at 09:57 -0500, James Taylor wrote:
> Have you tried adding another output definition?
> 
> Two changes below, first another output element, second changing  
> output.id to output_id ('.' has special meaning).
> 
> 
> On Feb 17, 2010, at 9:56 AM, vill wrote:
> 
> > <tool id="GAPSS_igf_2_WIG" name="GAPSS - IGF to WIG">
> > 	<description></description>
> > 	<command interpreter="perl">galaxy-wrapper_GAPSS_igf2wig.v2.pl $input
> > $SeperateStrands $CutOff $output $output_id</command>
> > 	<inputs>
> > 		<param name="input" type="data" label="IGF File input" />
> > 		<param name="SeperateStrands" type="select" help="on seperate  
> > strands"
> > label="0 or 1">
> > 			<option value="0">0</option>
> > 			<option value="1">1</option>
> > 		</param>
> > 		<param name="CutOff" type="select" help="Select Cutoff"  
> > label="Cutoff
> > size"  >
> >                        <option value="1">1</option>
> >                        <option value="0">0</option>
> >                </param>
> >
> > 	</inputs>
> >
> > 	<outputs>
> > 		<data name="output" format="interval"  />
>                   <data name="output_id" format="txt"  />
> >
> > 	</outputs>
> 




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