[galaxy-dev] create multiple historie items
vill
M.P.Villerius at lumc.nl
Wed Feb 17 10:08:51 EST 2010
Actually yes,
Once my per script gets executed with the wrapper script my two output
files get created in the files/000/ as dataset_424.dat_FWD.WIG.gz and
dataset_424.dat_REV.WIG.gz
but I can't get these files into separate uniquely ID'd history items
from which I can send the files off to the UCSC browser.
code :
<command interpreter="perl">galaxy-wrapper_GAPSS_igf2wig.v2.pl $input
$SeperateStrands $CutOff $output $output_id1 $output_id2 </command>
<data name="output_id1" format="interval">
<data name="output_id2" format="interval">
I must be doing something wrong within the xml file but I don't know
what?
//Michel
On Wed, 2010-02-17 at 09:57 -0500, James Taylor wrote:
> Have you tried adding another output definition?
>
> Two changes below, first another output element, second changing
> output.id to output_id ('.' has special meaning).
>
>
> On Feb 17, 2010, at 9:56 AM, vill wrote:
>
> > <tool id="GAPSS_igf_2_WIG" name="GAPSS - IGF to WIG">
> > <description></description>
> > <command interpreter="perl">galaxy-wrapper_GAPSS_igf2wig.v2.pl $input
> > $SeperateStrands $CutOff $output $output_id</command>
> > <inputs>
> > <param name="input" type="data" label="IGF File input" />
> > <param name="SeperateStrands" type="select" help="on seperate
> > strands"
> > label="0 or 1">
> > <option value="0">0</option>
> > <option value="1">1</option>
> > </param>
> > <param name="CutOff" type="select" help="Select Cutoff"
> > label="Cutoff
> > size" >
> > <option value="1">1</option>
> > <option value="0">0</option>
> > </param>
> >
> > </inputs>
> >
> > <outputs>
> > <data name="output" format="interval" />
> <data name="output_id" format="txt" />
> >
> > </outputs>
>
More information about the galaxy-dev
mailing list