April 2010 Archives by subject

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Starting: Fri Apr 2 10:15:39 EDT 2010
Ending: Fri Apr 30 16:43:09 EDT 2010
Messages: 228

• [galaxy-dev] "HTTP 403 Forbidden" when using custom GenomeBrowser server + external authentication   Assaf Gordon
• [galaxy-dev] "Never-starting" job   Assaf Gordon
• [galaxy-dev] 'change_format' doesn't work with workflows   Assaf Gordon
• [galaxy-dev] 'cookie_path' settings in reports   Assaf Gordon
• [galaxy-dev] 'cookie_path' settings in reports   Kanwei Li
• [galaxy-dev] [galaxy-bugs] help me please m in great trouble   Kelly Vincent
• [galaxy-dev] [galaxy-user] MACS input format   Steve Taylor
• [galaxy-dev] [galaxy-user] MACS input format   Daniel Blankenberg
• [galaxy-dev] [hg] galaxy 3561: Add FASTQ <--> Tabular converter tools.   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3562: trackster:   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3563: added sim_size as a way of comparing (eg) .png...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3564: Add template for structured history display   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3565: Added new tabular/pileup join tool and associa...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3566: Add a tool_runner entry for hapmap - similar t...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3567: merge to 3566:3ac95cd927d7   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3568: Missed the actual tool files for new join in l...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3569: require numpy before bx-python where numpy is ...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3570: Adding rg test outputs and updated tools   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3571: Adding images for manhattan plot tool help   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3572: Fixed a file name in the GLM test outputs   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3573: added a grey option for manhattan plot chromos...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3574: Two small tweaks to WGA/SNP tests - for rgQC a...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3575: Change to rgCaCo to output NAs unchanged rathe...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3576: Fix an eggs bug wherein compatible platform ve...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3577: Fix the column_maker tool so that if round is ...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3578: Add ability for reverse complement in e.g. FAS...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3579: Only display history name/rename if logged in   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3580: lims: fixed a bug in selecting workflow in the...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3581: Updated several NGS tools to better handle std...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3582: Patch: show User menu's history, dataset, and ...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3583: De-couple the user controller from the model, ...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3584: Improve display of tables in pages; tables in ...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3585: Fix header to column assignment in interval.se...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3586: Fix old style display viewport generation when...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3587: Decouple the masthead from base_panels.mako.   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3588: Eliminate the use of message.mako from certain...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3589: Add Tophat tool. Components: a wrapper script, ...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3590: Importing a workflow makes a copy rather than ...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3591: Add bed6 and bed12 datatypes, which are subcla...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3592: - Simple converter dependency system where con...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3593: Add rgtest.sh to generate test outputs   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3594: update to 3593   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3595: lims: required fields of samples are now enfor...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3596: lims: sample form defs dont include field type...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3597: Fix workflow annotation bug.   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3598: Sync hashbangs   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3599: New tool to select N random lines from a file/...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3600: Make visualizations (a) importable and (b) emb...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3601: Fix value-entry bug in dbkey select input comp...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3602: Two small fixes for WGA/SNP tools needed so th...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3603: Removed 'Shared Histories' from history option...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3604: Handle user registration and login in the gala...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3605: lims: default values for forms now working for...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3606: Move toward standardizing the way messages are...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3607: Only preview for non-binary files. Closes #283   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3608: Generalize the dbkey text + autocomplete featu...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3609: Fix a bug where using repeat grouping construc...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3610: Add offset to marker reports so can use manhat...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3611: Fixes to rgQC top table ordering and add offse...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3612: merged to 3610:23fb19105d96   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3613: trackster: don't allow adding of datasets in e...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3614: lims: delete/undelete request bug fixed. all s...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3615: Fix unicode bug for large files. Fixes #244   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3616: when running a converter, deps may be null in ...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3617: Add BedGraph datatype (wiggle-like data for in...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3618: Updated output format for solid2fastq converter   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3619: sff converter tool   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3620: Add FASTQ Quality Trimmer by sliding window tool.   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3621: removed unused file.   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3622: forms: fixed a bug in default values   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3623: Fix Test framework's handling of boolean and m...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3624: Add additional tests to FASTQ Quality Trimmer ...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3625: Rollback text + autocomplete for big selects. ...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3626: - Update jQuery.jStore, JSON2   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3627: Allow FASTQ parser to handle extra space padde...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3628: Updated NGS tools' stderr handling to use file...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3629: If a subdir of the library import dir is a sym...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3630: Fixed a bug in the new joiner tool   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3631: fixed forms and user_info functional tests   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3632: Enable user to change dbkey from a known key b...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3633: Add the raw uncompressed .js files needed for ...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3634: Added pound to trimmer list   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3635: merge   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3636: Allow setting the session cookie path for avoi...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3637: Pack scripts.   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3638: Decouple the TagHandler from the model by allo...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3639: Fix async updates in history panel   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3640: Fix tipsy tooltip staying on screen after dele...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3641: Rudimentary Cufflinks wrapper. Also created di...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3642: Merge   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3643: - Add support for custom dbkeys using user pre...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3644: Since the handle to the tag handler has been m...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3645: Add the enable_job_running param to the sample...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3646: Remove the outdated "Revision" file   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3647: Framework for the Galaxy Community Space.   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3648: lims: added email notification on request comp...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3649: Apply patch from Brad Chapman that resolves th...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3650: Fixed indel calling in pileup wrapper. TO DO: ...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3651: Somehow missed this necessary cleanup in my in...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3652: Don't display the divider in the user tab if u...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3653: Allow non-admin users that have the LIBRARY_MO...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3654: Remove tags from dataset's 'Edit Attributes' f...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3655: Drop the unique constraint on the username col...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3656: Fix parameter name bug in grid ajaxing that wa...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3657: Small fixes to rgGRR and rgManQQ   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3658: changes to help text   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3659: Have fastq set_meta() only skip counting 'comm...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3660: Decouple the Galaxy specific foms stuff ( addr...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3661: Less blather from rgGRR and new functional tes...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 3662: forgot rgcaco - stretch lines_diff   Greg Von Kuster
• [galaxy-dev] any plans to incorporate GSAssembler into Galaxy?   Kevin Silverstein
• [galaxy-dev] any plans to incorporate GSAssembler into Galaxy?   Anton Nekrutenko
• [galaxy-dev] Asking for Galaxy main public instance support, thanks!   Greg Von Kuster
• [galaxy-dev] Asking for Galaxy main public instance support, thanks!   WangJun
• [galaxy-dev] Asking for Galaxy main public instance support, thanks!   WangJun
• [galaxy-dev] Automated deployment of Galaxy associated data files   Brad Chapman
• [galaxy-dev] change_format and conditonal vars   Daniel Blankenberg
• [galaxy-dev] Changes to galaxysession cookie?   Assaf Gordon
• [galaxy-dev] Changes to galaxysession cookie?   Assaf Gordon
• [galaxy-dev] Changes to galaxysession cookie?   Nate Coraor
• [galaxy-dev] changing "Database/Build" back to 'unspecified'   Hans-Rudolf Hotz
• [galaxy-dev] changing "Database/Build" back to 'unspecified'   Jeremy Goecks
• [galaxy-dev] cleanup of old userless histories   Matthew Eldridge
• [galaxy-dev] das2 server   Davide Cittaro
• [galaxy-dev] data visualization in galaxy trackster   Vipin TS
• [galaxy-dev] data visualization in galaxy trackster   Kanwei Li
• [galaxy-dev] data visualization in galaxy trackster   Vipin TS
• [galaxy-dev] display at UCSC   Emeric Dubois
• [galaxy-dev] display at UCSC   Daniel Blankenberg
• [galaxy-dev] display at UCSC   Emeric Dubois
• [galaxy-dev] display at UCSC   Lee, Joshua
• [galaxy-dev] Dynamically adding tools to Galaxy   Sumedha Ganjoo
• [galaxy-dev] Error for one user when using edit properties   SHAUN WEBB
• [galaxy-dev] Error for one user when using edit properties   Greg Von Kuster
• [galaxy-dev] Error for one user when using edit properties   SHAUN WEBB
• [galaxy-dev] Error for one user when using edit properties   Greg Von Kuster
• [galaxy-dev] Error for one user when using edit properties   Hans-Rudolf Hotz
• [galaxy-dev] Error for one user when using edit properties   SHAUN WEBB
• [galaxy-dev] External library files   Nate Coraor
• [galaxy-dev] External library files   SHAUN WEBB
• [galaxy-dev] funny bug: a tool with a variable named "type" causes exception in workflows   Assaf Gordon
• [galaxy-dev] Galaxy issue   Modi, Amit
• [galaxy-dev] Galaxy issue   Nate Coraor
• [galaxy-dev] Galaxy issue   Modi, Amit
• [galaxy-dev] Galaxy issue   Nate Coraor
• [galaxy-dev] Galaxy issue   Modi, Amit
• [galaxy-dev] Galaxy issue   Nate Coraor
• [galaxy-dev] Galaxy issue   Ry4an Brase
• [galaxy-dev] Galaxy issue   Nate Coraor
• [galaxy-dev] Galaxy issue   Ry4an Brase
• [galaxy-dev] Galaxy issue   Modi, Amit
• [galaxy-dev] Galaxy issue   Assaf Gordon
• [galaxy-dev] Galaxy issue   Nate Coraor
• [galaxy-dev] Galaxy issue   Nate Coraor
• [galaxy-dev] Galaxy issue   Ry4an Brase
• [galaxy-dev] Galaxy issue   Daniel Blankenberg
• [galaxy-dev] Galaxy issue   Modi, Amit
• [galaxy-dev] Galaxy issue   Nate Coraor
• [galaxy-dev] Galaxy update problem   Martin Paradesi
• [galaxy-dev] grouping and sorting error at a bare local installation   Ry4an Brase
• [galaxy-dev] grouping and sorting error at a bare local installation   Jordi Rambla
• [galaxy-dev] Hack for HTTPS support for Genome Browser   Assaf Gordon
• [galaxy-dev] Hack for HTTPS support for Genome Browser   Nate Coraor
• [galaxy-dev] Having Problems with DRMAA_python   vill
• [galaxy-dev] id to output path query   Steve Taylor
• [galaxy-dev] id to output path query   Jeremy Goecks
• [galaxy-dev] id to output path query   Steve Taylor
• [galaxy-dev] id to output path query   Jeremy Goecks
• [galaxy-dev] Issue with deleting multiple histories   Jeremy Goecks
• [galaxy-dev] Job Control in Galaxy   Steve Taylor
• [galaxy-dev] Job Control in Galaxy   Steve Taylor
• [galaxy-dev] Job Control in Galaxy   Nate Coraor
• [galaxy-dev] Job Control in Galaxy   Nate Coraor
• [galaxy-dev] Job Control in Galaxy   Steve Taylor
• [galaxy-dev] Job Control in Galaxy   Nate Coraor
• [galaxy-dev] Job Control in Galaxy   Steve Taylor
• [galaxy-dev] Job Control in Galaxy   Steve Taylor
• [galaxy-dev] Job Control in Galaxy   Nate Coraor
• [galaxy-dev] Job Control in Galaxy   zong-pei.han at imm.ox.ac.uk
• [galaxy-dev] Job Control in Galaxy   Nate Coraor
• [galaxy-dev] Job Control in Galaxy   zong-pei.han at imm.ox.ac.uk
• [galaxy-dev] Job Control in Galaxy   Nate Coraor
• [galaxy-dev] MySQL Operational Error   Roy Weckiewicz
• [galaxy-dev] MySQL Operational Error   Brad Chapman
• [galaxy-dev] MySQL Operational Error   Roy Weckiewicz
• [galaxy-dev] NGS peak calling: MACS   Claudia Cattoglio
• [galaxy-dev] NGS peak calling: MACS   Claudia Cattoglio
• [galaxy-dev] NGS peak calling: MACS   Brad Chapman
• [galaxy-dev] NGS peak calling: MACS   Vipin TS
• [galaxy-dev] NGS peak calling: MACS   Daniel Blankenberg
• [galaxy-dev] NGS peak calling: MACS   Vipin TS
• [galaxy-dev] NGS peak calling: MACS   Kanwei Li
• [galaxy-dev] NGS peak calling: MACS   Claudia Cattoglio
• [galaxy-dev] NGS peak calling: MACS   Vipin TS
• [galaxy-dev] NGS peak calling: MACS   Kanwei Li
• [galaxy-dev] NGS peak calling: MACS   Vipin TS
• [galaxy-dev] NGS peak calling: MACS   Vipin TS
• [galaxy-dev] please help me please   aeman zahra
• [galaxy-dev] please help me please   Kelly Vincent
• [galaxy-dev] PLEASE HELP me please m in great trouble   aeman zahra
• [galaxy-dev] problem getting Galaxy to run on web   nsfox at uwaterloo.ca
• [galaxy-dev] problem getting Galaxy to run on web   Daniel Blankenberg
• [galaxy-dev] problem with getting the tables up in Profile Annotations   Daniel Blankenberg
• [galaxy-dev] Problems with lims   nsfox at uwaterloo.ca
• [galaxy-dev] Problems with lims   Ramkrishna Chakrabarty
• [galaxy-dev] Problems with lims   nsfox at uwaterloo.ca
• [galaxy-dev] removing the "view in GeneTrack" link   Hotz, Hans-Rudolf
• [galaxy-dev] removing the "view in GeneTrack" link   Daniel Blankenberg
• [galaxy-dev] removing the "view in GeneTrack" link   Hans-Rudolf Hotz
• [galaxy-dev] run.sh paste error   Kanwei Li
• [galaxy-dev] sharing histories with a group   Edward Kirton
• [galaxy-dev] sharing histories with a group   Jeremy Goecks
• [galaxy-dev] sharing tools?   Edward Kirton
• [galaxy-dev] sharing tools?   James Taylor
• [galaxy-dev] tiny usability issue - cloning vs. importing shared history   Jeremy Goecks
• [galaxy-dev] tiny usability issue - cloning vs. importing shared history   Assaf Gordon
• [galaxy-dev] verbosity of log message   nsfox at uwaterloo.ca
• [galaxy-dev] verbosity of log message   Nate Coraor
• [galaxy-dev] web application scaling   Edward Kirton
• [galaxy-dev] web application scaling   Nate Coraor
• [galaxy-dev] Weird problem with importing datasets   Nate Coraor
• [galaxy-dev] Weird problem with importing datasets   Chris Cole
• [galaxy-dev] Weird problem with importing datasets   Nate Coraor
• [galaxy-dev] What is the suggested way of adding ones own eggs/modules?   Nate Coraor
• [galaxy-dev] What is the suggested way of adding ones own eggs/modules?   Alexander Rose
• [galaxy-dev] What is the suggested way of adding ones own eggs/modules?   Kanwei Li
• [galaxy-dev] {Disarmed} Re: display at UCSC   Emeric Dubois
• [galaxy-dev] {Disarmed} Re: display at UCSC   Lee, Joshua

Last message date: Fri Apr 30 16:43:09 EDT 2010
Archived on: Sun May 2 11:23:51 EDT 2010

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