August 2009 Archives by date

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Starting: Mon Aug 3 08:55:24 EDT 2009
Ending: Sat Aug 29 08:24:10 EDT 2009
Messages: 175

• [galaxy-dev] Bar charts   Matthew Eldridge
• [galaxy-dev] Bar charts   Guruprasad Ananda
• [galaxy-dev] [hg] galaxy 2518: merging heads   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2516: Added test files for BWA   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2517: Added solid_to_fastq and fastq_conversions con...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2523: Commented out failing test in solid_to_fastq a...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2522: Fix bar chart output format.   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2520: Provide datatypes registry location when setti...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2519: Enhance data_source.py to take advantage of th...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2521: Fix megablast wrapper never cleaning up tempfi...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2524: Tweaks to grids to make it easier to override ...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2526: Fixed CSS issue that was causing logo to becom...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2525: Typos in cron/README.txt   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2527: Merging from central   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2528: Maintain centering   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2529: Use z-index:-1 instead of previous methods   Greg Von Kuster
• [galaxy-dev] [galaxy-user] custom tool output path   James Taylor
• [galaxy-dev] Bar charts   Pieter Neerincx
• [galaxy-dev] manage_db: MySQL error 1059   Nate Coraor
• [galaxy-dev] [hg] galaxy 2530: Changes to browse_library UI, removed nested t...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2531: Renamed test files and fixed output datatype p...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2534: Remove last cheetah templates (dataset errors ...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2535: Fixed the issue which was causing the 'Lab' ta...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2533: Bugfix in process_css.py   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2532: Allow nested groupings in testing framework.   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2537: In tool tests, only add a file once if it is r...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2536: Testing framework will now click the add butto...   Greg Von Kuster
• [galaxy-dev] Specifying a PATH for local binaries?   Chris Cole
• [galaxy-dev] Specifying a PATH for local binaries?   Chris Cole
• [galaxy-dev] Specifying a PATH for local binaries?   Nate Coraor
• [galaxy-dev] Specifying a PATH for local binaries?   Chris Cole
• [galaxy-dev] Specifying a PATH for local binaries?   Nate Coraor
• [galaxy-dev] Specifying a PATH for local binaries?   Chris Cole
• [galaxy-dev] [hg] galaxy 2538: LIMS enhancements   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2541: Merge with f4f915fa16605ebbcf16ab9969c10e9380e...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2540: Cleaned up unwanted code   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2539: Fix for Maf.set_meta() when a component is pro...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2542: Grid: Age -> Created, for dates further than a...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2543: Remove redundant icon   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2545: Fixed masthead disappearing in older firefox   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2546: Merging trunk   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2544: Overview improvements:   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2548: Prevent metadata or datatype from being change...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2547: Merge.   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2549: Have metadata editing tests wait for completio...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2550: Re-introduce library templates which are now b...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2551: Enable the cleanup_datasets script to purge Da...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2552: Have update_ucsc.sh.sample add 'chrom' dir to ...   Greg Von Kuster
• [galaxy-dev] FASTX-Toolkit v0.0.10 - small improvements   Assaf Gordon
• [galaxy-dev] Problem in Galaxy-Reports + MySQL   Assaf Gordon
• [galaxy-dev] [hg] galaxy 2553: Added browse button on csv importers in LIMS   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2555: Fix error reporting template.   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2554: Fix a bug with specifying a Tool Class differe...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2556: 1) Enhancements for sharing histories based on...   Greg Von Kuster
• [galaxy-dev] Sharing histories in galaxy [long]   Greg Von Kuster
• [galaxy-dev] Sharing histories in galaxy [long]   Assaf Gordon
• [galaxy-dev] SGE Cluster suggestion   Assaf Gordon
• [galaxy-dev] SGE Cluster suggestion   Chris Cole
• [galaxy-dev] IE bug   SHAUN WEBB
• [galaxy-dev] IE bug   James Taylor
• [galaxy-dev] SGE Cluster suggestion   Chris Cole
• [galaxy-dev] IE bug   SHAUN WEBB
• [galaxy-dev] IE bug   James Taylor
• [galaxy-dev] SGE Cluster suggestion   Assaf Gordon
• [galaxy-dev] [hg] galaxy 2557: When setting metadata external is configured, ...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2558: Integrate 'rerun' support from Assaf Gordan. N...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2561: Restoring history/grid.mako   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2559: Fixing masthead centering again   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2562: Change GUI references to Library to now be Dat...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2560: Resolve issue #129, 'library view jumps to top...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2563: Functional test fixes for my last commit.   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2564: Fix for library expand buttons in IE (even tho...   Greg Von Kuster
• [galaxy-dev] Possible Bug in SGE Runner when recovering jobs   Assaf Gordon
• [galaxy-dev] galaxy-dev Digest, Vol 44, Issue 22   Ross
• [galaxy-dev] SGE Cluster suggestion   Chris Cole
• [galaxy-dev] Database locked errors   SHAUN WEBB
• [galaxy-dev] Database locked errors   Nate Coraor
• [galaxy-dev] Database locked errors   Nate Coraor
• [galaxy-dev] Database Connection   SHAUN WEBB
• [galaxy-dev] Database Connection   Nate Coraor
• [galaxy-dev] Database Connection   SHAUN WEBB
• [galaxy-dev] [hg] galaxy 2565: Deprecated code corrections for supporting Pyt...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2566: Provide better bi-directional Python version c...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2568: Added two new datatypes (sam and bam) and an a...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2567: Change import from . to __init__.   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2571: Documentation for dragging change   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2575: Implemented local storage for preferences, obs...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2573: Made workflow's "Input Dataset" name text fiel...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2569: Added sniff import statement to tabular.py so ...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2574: Escape HTML entities using cgi.escape so that ...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2572: Allows storing of multiple preferences in one ...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2570: Can only resize overview using the border panels   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2576: Slight tweak to resizing workflow overview   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2577: Merge trunk   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2579: Typo   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2578: Fix workflow layout   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2580: Auto-save for workflow forms   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2581: Merge.   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2582: Tweak workflow save changes to use more specif...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2584: Improved the form rendering method   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2583: Real Job(tm) upload support   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2586: Added functional tests for requests & forms   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2585: First pass of the functional tests for forms &...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2588: Merge with 5fa8803716fd7d3250a1a78f5521aa18b3e...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2587: Fixed indentation   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2589: Merge with f6e0863862efe02bb416596b08010b513f9...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2591: Force FieldStorage to write tempfiles and neve...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2595: Merge with 2c1916d89194f6802102cab13e67bebcf68...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2592: Change dbkey of unmapped liftover dataset to t...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2594: Added request editing functional test   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2590: Fixed a stupid and truly horrible paired end s...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2593: Fixed a bug in rendering form wrt AddressField   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2598: Merge trunk   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2597: Better naming for collected datasets in JobToO...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2596: Fix collect_primary_datasets() and add collect...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2599: Merge trunk   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2601: Use JSON2.js for all JSON operations, and remo...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2603: Merge trunk   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2602: Require json2.js   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2600: Remove redundant auto-save js   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2604: Rework popup menu styles. Popups are now large...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2605: Fixing styles for history rename and share int...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2608: [mq]: pages   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2609: Fix security problem with grids. Template shou...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2610: Backed out changeset 19b86ccccf6f (not quite r...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2611: Merge   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2607: Fix clone history tests   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2606: Merge   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2615: IE fixes for menu buttons   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2612: Repack jstore without comments   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2613: Remove logging from galaxy.base   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2614: Use small messages by default   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2616: Cache defeat for css/js   Nate Coraor
• [galaxy-dev] [hg] galaxy 2617: Support for user defined pages. Page content i...   Nate Coraor
• [galaxy-dev] [hg] galaxy 2618: Remove unused js   Nate Coraor
• [galaxy-dev] [hg] galaxy 2619: Merge   Nate Coraor
• [galaxy-dev] [hg] galaxy 2620: Message for page change script   Nate Coraor
• [galaxy-dev] [hg] galaxy 2621: set job state to new in upload tool action so ...   Nate Coraor
• [galaxy-dev] [hg] galaxy 2622: Add packed script for pages, fix bug where use...   Greg Von Kuster
• [galaxy-dev] IE bug   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2623: Fix for multi-byte file uploads   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2624: Some styles for text content areas. Pages will...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2626: Fix for sharing a history via a link.   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2625: Allow column parameters to be late validated i...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2627: Fix for importing a shared history via a link ...   Greg Von Kuster
• [galaxy-dev] Managed releases?   Chris Cole
• [galaxy-dev] [hg] galaxy 2628: Fix for importing a shared history via a link ...   Greg Von Kuster
• [galaxy-dev] <param> multiple formats   Dominic Tolle
• [galaxy-dev] <param> multiple formats   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2632: Added documentation and exception handling for...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2630: Add tables to support tagging of histories, da...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2631: Image files for tagging UI   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2629: Updated the Bam datatype so that the file is i...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2637: Purge references to Beaker and flup from buildapp   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2635: Updating version of Beaker egg (needed by Mako...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2636: Merge   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2633: Migration script to handle mysql index error i...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2638: One more flup reference   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2634: Fix for unicode filenames in upload.   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2642: CSS code for tagging   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2643: JS files for tagging   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2639: Added samtools-based tools (sam_to_bam, sam_me...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2641: web controller to handle tagging (add/remove/a...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2644: changes to the model to support tags   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2640: Performance improvements in the GalaxyRBACAgen...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2645: changes to the model to support tags   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2647: add tagging to histories   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2646: add autocomplete_tagging.css.tmpl to templates...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2649: tags module for handling and processing tags   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2648: add tagging to HDAs   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2653: Removing the galalxy.web.framework.servers mod...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2650: Packed JS files for tagging   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2651: merge   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2652: Automated merge with ssh://scofield.bx.psu.edu...   Greg Von Kuster
• [galaxy-dev] [hg] galaxy 2654: Fix unit tests and clean up code for retrievin...   Greg Von Kuster

Last message date: Sat Aug 29 08:24:10 EDT 2009
Archived on: Tue Nov 10 15:15:32 EST 2009

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