[galaxy-commits] commit/galaxy-central: natefoo: Fix SOAPdenovo binary name

Bitbucket commits-noreply at bitbucket.org
Fri Aug 26 10:39:42 EDT 2011


1 new changeset in galaxy-central:

http://bitbucket.org/galaxy/galaxy-central/changeset/81ee8622a9b5/
changeset:   81ee8622a9b5
user:        natefoo
date:        2011-08-26 16:39:34
summary:     Fix SOAPdenovo binary name
affected #:  1 file (2 bytes)

--- a/tools/ilmn_pacbio/soap_denovo.xml	Thu Aug 25 11:37:07 2011 -0400
+++ b/tools/ilmn_pacbio/soap_denovo.xml	Fri Aug 26 10:39:34 2011 -0400
@@ -1,12 +1,12 @@
 <tool id="soap_denovo" name="SOAPdenovo" version="1.0.0"><description>Short-read de novo assembly</description><!--
-      # SOAPdenovo127mer all -s ${soap_config} -o assembly -K ${k} -p 8 -d -D
+      # SOAPdenovo-127mer all -s ${soap_config} -o assembly -K ${k} -p 8 -d -D
       # cat ${soap_config} > ${output1}
       # cp ${soap_config} ${output1} &amp;&amp;
   --><command>
-      SOAPdenovo127mer all -s ${soap_config} -o assembly -K ${k} -p 24 -d -D -R
+      SOAPdenovo-127mer all -s ${soap_config} -o assembly -K ${k} -p 24 -d -D -R
   </command><inputs><conditional name="inputs">

Repository URL: https://bitbucket.org/galaxy/galaxy-central/

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